Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2540632	2541008	377	50 [0]	[0] 52	rfaY	lipopolysaccharide core biosynthesis protein

GTCTTATAATATAAATATCATCAAGGTTTTTCGTTC  >  minE/2540596‑2540631                                    | gTCTTATAATATAAATATCATCAGGGTTTTTCGTTc  >  1:229581/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:645508/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1038545/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:259684/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:274506/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:301507/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:376031/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:458881/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:474573/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:612092/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:615162/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:620070/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:639959/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:224596/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:686517/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:6971/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:698120/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:698198/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:699113/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:764736/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:770370/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:900718/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:9204/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:957427/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:989468/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1471640/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1055313/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1057391/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1123537/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1162999/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1179038/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1191824/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1203839/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1238420/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1307325/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:142717/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1447662/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:209730/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1474993/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:153916/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1554941/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1588343/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1624791/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1680010/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1702078/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:179092/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:1800320/1‑36 (MQ=255) gTCTTATAATATAAATATCATCAAGGTTTTTCGTTc  >  1:206078/1‑36 (MQ=255) gTCTTATAATATAAATATCAT‑AAGGTTTTTCGTTc  >  1:635090/1‑35 (MQ=38) gTCTTATAATAAAAATATCATCAAGGTTTTTCGTTc  >  1:1195930/1‑36 (MQ=255)                                    | GTCTTATAATATAAATATCATCAAGGTTTTTCGTTC  >  minE/2540596‑2540631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑