Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2662798	2663003	206	32 [0]	[0] 18	[rtcR]	[rtcR]

GAGTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAC  >  minE/2662736‑2662797                                                              | gagTGTCGGACGCCATTTTGACCAGCGCTGACTGGCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1698657/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1191204/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:98151/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:918739/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:913148/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:866145/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:832313/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:720214/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:682235/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:677054/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:653995/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:605858/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:56745/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:434440/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:318384/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:280524/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:271796/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1258385/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:187682/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1831471/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1700511/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1686484/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1631731/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1566187/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1554513/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1357052/62‑1 (MQ=255) gagTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1478549/62‑1 (MQ=255) gagTGTAGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:312766/62‑1 (MQ=255)  agTGTCGGACGCCATTTTTACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1375989/61‑1 (MQ=255)  agTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:424841/61‑1 (MQ=255)        ggACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:737120/55‑1 (MQ=255)            gCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAc  <  1:1167996/51‑1 (MQ=255)                                                              | GAGTGTCGGACGCCATTTTGACCAGCGCTGACTGCCGCGCCCGGCATAATCCAGTACGGTAC  >  minE/2662736‑2662797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑