Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540189	540205	17	71 [0]	[0] 22	rhtA	threonine and homoserine efflux system

CCGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGC  >  minE/540206‑540267 |                                                              ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGaaa                   >  1:448918/1‑45 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAATATCATCCCGGAAACGGc  >  1:1049902/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1732359/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:904784/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:810610/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:707615/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:610634/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:521485/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:516725/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:428581/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:412744/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1008024/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1727666/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1619812/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1415554/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1389374/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1334036/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1324197/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1303460/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1065136/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGc  >  1:1028212/1‑62 (MQ=255) ccGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCACGGAAACGGc  >  1:1896371/1‑62 (MQ=255) |                                                              CCGAGCGCCAGTAGCTGTATGGGTGTCAGTGTTTCTCCGAGGAAAATCATCCCGGAAACGGC  >  minE/540206‑540267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑