Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540269	540310	42	147 [0]	[0] 55	rhtA	threonine and homoserine efflux system

GTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGC  >  minE/540311‑540372 |                                                              gtTTGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:478394/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCTATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAg   >  1:651932/1‑61 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTTCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1884772/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGCGCGGTCGAGAGAATAGc  >  1:1204968/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGCGAGAATAGc  >  1:377175/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGATAAt     >  1:548714/1‑59 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATa    >  1:1735664/1‑60 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:721034/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:250049/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:269821/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:355841/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:392888/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:413559/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:526066/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:584253/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:716128/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1835276/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:73653/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:745264/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:783971/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:801289/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:805131/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:821802/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:841252/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:843267/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:866469/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:869745/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:94078/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:983727/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:136784/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1022491/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1039705/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1047211/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1095195/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1235438/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1291/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:13471/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1347866/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1348964/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1358220/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1363211/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1882422/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1457657/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1483944/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1510465/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1560287/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1577102/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1588814/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1601350/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:16813/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1759999/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1813869/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1827010/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc  >  1:1013905/1‑62 (MQ=255) gtTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGCTCGAGAGAATAg   >  1:1073311/1‑61 (MQ=255) |                                                              GTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGC  >  minE/540311‑540372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑