Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	825581	825600	20	3 [0]	[0] 59	ychN/ychP	conserved hypothetical protein/predicted invasin

GGCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCG  >  minE/825601‑825661 |                                                             ggCATGGCTCCCGAAATTCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1210417/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAACAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1483758/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGc                      >  1:424906/1‑41 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCt                     >  1:1009593/1‑42 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAGAGATTTCg  >  1:1833745/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTc   >  1:1707573/1‑60 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTc   >  1:1319046/1‑60 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:489628/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:574793/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:417704/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:39907/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:355383/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:337222/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:307647/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:301658/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:250099/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:241066/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:18866/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:545389/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1682846/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:587687/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:59002/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:658046/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:724458/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:746521/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:79100/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:796081/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:825883/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:827099/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:891225/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:900028/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:954444/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:994051/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:138036/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1018527/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1035936/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1059950/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1140430/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:114470/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1170049/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1234980/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1249653/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1318910/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1361820/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1805675/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1404130/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1434432/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1441183/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1454330/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:154093/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1555216/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1573095/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1577404/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1609499/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1611082/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1615237/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCg  >  1:1658692/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTACg  >  1:1277453/1‑61 (MQ=255) ggCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAAGTGTGAAAGATTTCg  >  1:109371/1‑61 (MQ=255) |                                                             GGCATGGCTCCCGAAAATCATGATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCG  >  minE/825601‑825661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑