Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1176876	1176920	45	31 [0]	[0] 61	sppA	protease IV

CAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGG  >  minE/1176921‑1176982 |                                                              cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:375246/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1627207/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1683565/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1733273/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1745472/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1761548/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1762910/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1772459/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1781922/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1828246/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1848727/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1863909/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:233070/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:239241/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:32717/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1622285/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:459549/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:542769/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:561081/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:575440/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:67556/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:726486/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:780606/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:787248/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:822262/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:877921/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:891611/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:899944/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:953072/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:966492/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1620052/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1019470/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1067302/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1071685/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1076326/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1092938/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1173713/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1174631/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:119931/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:121331/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:122083/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1223803/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1238227/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1256201/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1291816/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1296622/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1317487/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1407911/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1409466/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1436698/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1465802/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1553751/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:155847/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1583747/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1585358/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1595311/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1598010/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1000437/62‑1 (MQ=255) cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTCACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1006763/62‑1 (MQ=255) cAGTACATCGG‑AAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1439792/61‑1 (MQ=255) cAGTACAGCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTgg  <  1:1632855/62‑1 (MQ=255) |                                                              CAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGG  >  minE/1176921‑1176982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑