Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1520325	1520352	28	108 [1]	[0] 45	truA	pseudouridylate synthase I

ATAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCATT  >  minE/1520353‑1520414 |                                                              aTAACGTTGCGCCACGGGGTTCGGGACTGTCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1506988/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCg                        >  1:939091/1‑40 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCg                        >  1:2196/1‑40 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCa                      >  1:305048/1‑42 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAgg            >  1:1134652/1‑52 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:174200/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1549515/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1748125/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1818048/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1820967/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1824175/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1874542/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1874669/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:201116/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:257149/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:275149/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:48502/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:495625/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:521454/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:583750/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:689925/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:75003/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:842868/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1274073/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1061799/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1118044/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1129097/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1186704/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:118934/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1210920/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1214178/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1248642/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1689012/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:131550/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1324109/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1350076/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1350814/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1398365/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1454533/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1471456/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1503762/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1517044/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAtt  >  1:1046218/1‑62 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAt   >  1:1232564/1‑61 (MQ=255) aTAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCAt   >  1:91540/1‑61 (MQ=255) |                                                              ATAACGTTGCGCCACGGGGTTCGGGACTGGCACTGCACCGCACGGAACGAGGTGAAATCATT  >  minE/1520353‑1520414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑