Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1558773	1558775	3	5 [0]	[0] 60	emrK	EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component

AGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGT  >  minE/1558776‑1558827 |                                                    agaCTTGTGCAGAAATTGGATCTGCATTCCCGGTGACATAGGCGTCATCTGt  >  1:986044/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACa                >  1:1666989/1‑38 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATa              >  1:965664/1‑40 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGc           >  1:1578304/1‑43 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:539941/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:678384/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:661400/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:648308/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:627793/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:589201/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:564115/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:686133/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:537450/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:519239/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:439651/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:352522/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:314486/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:684555/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:273468/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:686406/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:717593/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:719642/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:807324/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:810595/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:821757/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:827052/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:843588/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:885321/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:901342/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:977617/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:996680/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1375934/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1007999/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1036773/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:107066/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1071271/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1075026/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1195038/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1216472/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:124634/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1251394/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1280523/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1298272/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1301455/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1314434/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1339047/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:308306/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1486313/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1563947/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1592948/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1600367/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1733994/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:177611/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1820255/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1822096/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1874997/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:232051/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:268774/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGt  >  1:1003399/1‑52 (MQ=255) agaCTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGACATATGt  >  1:218686/1‑52 (MQ=255) |                                                    AGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGT  >  minE/1558776‑1558827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑