Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1559272	1559321	50	23 [0]	[1] 79	emrK/evgA	EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component/DNA‑binding response regulator in two‑component regulatory system with EvgS

ATGTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACG  >  minE/1559320‑1559381   |                                                            aTGTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1224692/62‑1 (MQ=255)   gTCTGTATTACTTCAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1333317/60‑1 (MQ=255)   gTCTGTATTACTACCGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:489114/60‑1 (MQ=255)   gTCTGTATTACTACAGGGTGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1837028/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTTCAAAGGGAATAATCTATGAACg  <  1:116880/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:417128/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:598449/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:596575/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:578630/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:573869/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:563660/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:530306/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:487116/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:451530/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:442403/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:613983/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:399538/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:364817/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:349571/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:348114/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:314724/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:300996/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:291393/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:772314/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:961750/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:961253/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:945841/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:944354/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:923752/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:897027/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:852450/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:818477/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:775830/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:612631/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:76543/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:730480/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:723413/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:708294/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:707159/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:672788/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:628535/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:249839/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1326684/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:277440/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1392151/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1375547/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1358204/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1351803/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1347800/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1338599/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1338109/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1395153/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1288468/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:124527/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1207461/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1205348/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1153716/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1019515/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1014632/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1002564/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1752337/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:274333/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1000428/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:206878/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:193964/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1794921/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1774536/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1764656/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1423206/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1723380/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1678065/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1670913/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1654642/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1523978/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1523533/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1476443/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACg  <  1:1456833/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATATATGAACg  <  1:1038/60‑1 (MQ=255)   gTCTGTATTACTACAGGGAGAAGGGAGATGCTTAATTGCAAAGGGAATAATCTATGAACg  <  1:1058030/60‑1 (MQ=255)   |                                                            ATGTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTATGAACG  >  minE/1559320‑1559381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑