Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2539953	2540397	445	6 [0]	[0] 47	rfaJ	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase

AAAAAAGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTC  >  minE/2540398‑2540459 |                                                              aaaaatGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:765845/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATtata                         >  1:1511067/1‑39 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGTATTATAGCAGGAGTc  >  1:731508/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGt   >  1:668506/1‑61 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:629561/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:238862/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:261417/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:437086/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:460535/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:474144/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:481157/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:493714/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:5388/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:605014/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:60754/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1829310/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:639836/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:650300/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:699687/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:855852/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:8764/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:913637/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:984663/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:994168/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1465099/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1039982/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1070489/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1146143/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1178442/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1249266/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1290055/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1337369/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:134380/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1406414/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:14252/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1448604/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1869566/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1492403/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1495434/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1569589/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1602603/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1613039/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1695919/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1749924/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1810890/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTc  >  1:1003089/1‑62 (MQ=255) aaaaaaGATATAAACATCTTTTAGTGCAAAATCATTATATCTCAGGAAAtata           >  1:1752570/1‑53 (MQ=255) |                                                              AAAAAAGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTC  >  minE/2540398‑2540459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑