Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2569087	2569105	19	78 [0]	[0] 94	mtlA	fused mannitol‑specific PTS enzyme IIABC components

CACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTG  >  minE/2569106‑2569167 |                                                              cACGCGATAAACGCTCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:952403/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGGTGAGGAAACGACCAAAGCTTTg  <  1:746095/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:453693/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:662657/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:654193/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:652232/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:643542/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:612772/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:612224/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:547107/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:526885/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:523540/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:520550/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:4944/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:68630/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:437075/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:417548/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:412251/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:388918/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:319890/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:308221/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:275091/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:266704/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:256204/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:246478/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:800954/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:996188/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:963376/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:954966/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:946366/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:92349/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:915372/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:891959/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:873103/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:830721/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:803276/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:678794/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:79948/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:76749/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:747689/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:730075/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:729000/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:72429/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:713582/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:712672/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:708111/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:224200/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1205093/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1428959/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1425490/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1412569/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1411371/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1396702/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1391764/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1367917/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1356603/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1350727/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1343861/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1280215/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1438302/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1204178/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1202980/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1132345/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1118094/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1109904/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1096792/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1077427/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:103844/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1022482/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1014773/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1451926/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:223243/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:197154/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1885285/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1855120/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:176762/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:172633/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1721988/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1720235/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1720172/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1707750/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1691998/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:167288/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:166265/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1660331/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1658664/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1587822/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1530663/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1528107/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:146339/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1456720/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1006530/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGCAAACGACCAAAGCTTTg  <  1:1787670/62‑1 (MQ=255) cACGCGATAAACGCGCCGATATTTGGCATCACAATGTTGCTGAGGAAACGACCAAAGCTTTg  <  1:1274804/62‑1 (MQ=255) |                                                              CACGCGATAAACGCGCCGATATTTGGCATCACCATGTTGCTGAGGAAACGACCAAAGCTTTG  >  minE/2569106‑2569167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑