| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 419,699 | 1 | . | A | 26.7% | 438.9 / 236.8 | 210 | intergenic (+122/+32) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| Reads supporting (aligned to +/- strand): ref base . (153/1); new base A (0/56); total (153/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.15e-21 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 210 total aligned reads displayed.
AGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACG > minE/419649‑419743 | aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGCACGCAGAAAAGC‑A‑AAAAGCTCg > 1:156828/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTc > 1:314099/1‑60 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTc > 1:1842286/1‑60 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:478331/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:79032/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1276949/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:212439/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:778564/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1317347/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:756088/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1813822/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1454154/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:358334/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1708465/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:483617/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1549377/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1609074/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:585041/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:497346/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1085883/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1244806/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:795604/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1217764/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1199924/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1099969/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1048872/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:811324/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:828841/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:404383/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1248548/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:850377/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:1116243/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCg > 1:284825/1‑61 (MQ=255)aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAAAGCAGAAAAGC‑A‑AAAAGCt > 1:1557291/1‑59 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:356629/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1398199/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:175685/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:363502/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1864884/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:469354/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:436449/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:765307/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1024839/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:96961/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:939564/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1108850/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:89914/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1169900/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:788962/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1290146/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:528161/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:136374/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:736077/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:731011/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:676356/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:657117/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:622028/62‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:5597/62‑1 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1896047/61‑1 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1373042/61‑1 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1304483/61‑1 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1661322/61‑1 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:1273323/61‑1 (MQ=255) tCGACATCGAATGAACGCAGAAAAGCAA‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:690558/61‑1 (MQ=38) ttcaatgaaCGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1258257/4‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCt > 1:1442062/1‑42 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg > 1:1193086/1‑60 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1236359/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1392277/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:749581/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1319039/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:79433/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:69442/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1136049/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1111031/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:916988/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1058955/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:952574/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1034717/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:986859/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1686812/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:379785/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:385087/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:387302/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:256439/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:227522/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1008542/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1734026/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:51586/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1649891/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1627816/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1623277/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:616095/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1509252/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1484633/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:1464428/1‑61 (MQ=255) ttGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:688435/1‑61 (MQ=255) ttGAATGAACGC‑‑AAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACg > 1:843554/1‑62 (MQ=38) ttGAAAGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg > 1:1189806/1‑60 (MQ=255) aaaGC‑ATAAAAGCTCTCAGAAGCTTGCTTTTTTAATGTgg < 1:350705/40‑1 (MQ=255) | AGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGC‑A‑AAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACG > minE/419649‑419743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |