| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,890,477 | 0 | G | T | 69.0% | 94.3 / inf | 316 | intergenic (‑259/+29) | msrA/ppa | methionine sulfoxide reductase A/inorganic pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base G (0/98); new base T (0/218); total (0/316) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 316 total aligned reads displayed.
AAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACG > minE/2890452‑2890495 | aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:267164/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:303810/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:299852/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:295218/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:28768/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:284689/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:283772/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:280571/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:273128/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:271250/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:267959/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:306797/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:260490/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:258929/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:252943/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:249080/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:244595/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:239834/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:235462/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:229744/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:225804/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:55341/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:83839/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:79987/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:75664/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:73272/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:70417/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:68043/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:6678/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:66492/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:55679/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:103936/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:52163/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:487/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:45504/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:40480/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:35355/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:33068/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:316597/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:313164/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:310946/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:164472/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:185694/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:185/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:180981/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:12431/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:127440/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:168918/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:128965/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:168299/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:223109/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:161114/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:135034/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:151144/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:148524/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:13629/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:140485/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:14113/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:18895/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:190628/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:192927/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:111175/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:109160/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:221918/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:196023/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:107253/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:198869/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:200776/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:100313/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:208019/44‑1 (MQ=38)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:44359/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:92322/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:88881/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:85190/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:51148/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:80640/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:59521/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:12044/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:114314/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:17445/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:224480/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:217237/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:216100/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:204165/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:248171/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:255386/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:264237/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:276884/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:184104/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:42670/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:289221/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:293651/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:168732/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:157562/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:31857/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:37099/44‑1 (MQ=255)aaaaaaCCCTTACTAACCGAAACCCTGCGTTCAGTGTTATTACg < 1:5725/44‑1 (MQ=255) aaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:131699/43‑1 (MQ=38) aaaaaCCCTTACTAACCGAAGCCCTGCGTTCAGTGTTATTACg < 1:146603/43‑1 (MQ=38) aaaaaCCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACg < 1:194683/43‑1 (MQ=255) | AAAAAACCCTTACTAACCGAAGCCCGGCGTTCAGGGTTATTACG > minE/2890452‑2890495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |