| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 18686 = | 45 (0.550) | 4 (0.060) | 3/86 | NT | 8.6% | intergenic (+31/‑29) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| ? | AP009048 | 18711 = | 45 (0.630) | intergenic (+56/‑4) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator | |||||
TGCCAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/18761‑18686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTC > AP009048/18711‑18779 TGCCAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAA < 1:7327491/71‑1 CCAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGG < 1:5039322/71‑1 CAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGG < 1:7856391/71‑1 CAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGG < 1:1829074/71‑1 GAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAA < 1:1299242/66‑1 GTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGGA > 1:7364589/1‑58 GTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGGA > 1:3742108/1‑58 TTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGG < 1:132947/52‑1 AATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGGAG < 1:7662225/51‑1 AATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGG < 1:1610125/48‑1 ATTGATATGAGACATGCTCATTTCTCTCCCTTATAACAATGAAAAGGG < 1:3759773/48‑1 ATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGG < 1:2250159/48‑1 ATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGG < 1:2799372/48‑1 TGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAA > 1:6964531/1‑43 TTCTCTCCCTGATAACAATGAAAAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCAC < 1:5334644/63‑1 TCTCTCCCTGATAACAATGAAAAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCAC < 1:3230581/62‑1 CTCTCCCTGATAACAATGAAAAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTA > 1:4532205/1‑69 TCTCCCTGATAACAATGAAAAGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCAC > 1:694576/1‑60 AGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTG < 1:1573370/54‑1 AGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTG < 1:5220100/54‑1 AGGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTG < 1:2341956/54‑1 GGGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTT < 1:3138314/41‑1 GGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAA < 1:7035698/65‑1 GGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAA < 1:2142663/65‑1 GGAGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAA < 1:1018076/65‑1 GAGAGAAATGAGCATTTCTCATATCAATTACAACCACTTGTATTACTT < 1:5394314/48‑1 GAGAGAAATGAGCATGTCTCATATCAATTACAACCACTT > 1:5821421/1‑39 GAGAGAAATGAGCATGTCTCATATCAATTACAACCACTT > 1:2989305/1‑39 AGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTC > 1:1887984/1‑71 AGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGA > 1:5492858/1‑65 AGAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCT > 1:1705391/1‑49 TGCCAGAAGTAATACAAGTGGTTGTAATTGATATGAGACATGCTCATTTCTCTCCCTGATAACAATGAAAAGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/18761‑18686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggagAGAAATGAGCATGTCTCATATCAATTACAACCACTTGTATTACTTCTGGCATGTCTATAAAGAAGGTTC > AP009048/18711‑18779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |