New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 4866592 (1.130)8 (0.110) 4/86 NT 9.2% coding (897/1863 nt) kefC potassium:proton antiporter
?AP009048 = 48685 77 (1.080)coding (917/1863 nt) kefC potassium:proton antiporter

TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/48594‑48665
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttgATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTCTAT  <  AP009048/48685‑48618
                                                                                                                                            
TTTTTCATCGGTGTTGGCATGTCGATATACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTT                                                                       <  1:6806259/71‑1
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTT                                                                       <  1:955754/71‑1
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTT                                                                       <  1:3089660/71‑1
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:6505963/70‑1
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:4462513/70‑1
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATT                                                                         <  1:3593018/69‑1
 TTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTG                                                                      >  1:955134/1‑71
  TTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTG                                                                      <  1:6014747/70‑1
                   TGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:2047531/51‑1
                   TGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:2449951/51‑1
                   TGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:6369429/51‑1
                   TGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:6023567/51‑1
                   TGTCGATAGACTTTCGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTT                                                                        <  1:4176618/51‑1
                      CGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCA                                                                           >  1:1107614/1‑45
                         TAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGA                                                      >  1:3826017/1‑63
                           GACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAAA                                             <  1:3673791/70‑1
                           GACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAAA                                             <  1:3178508/70‑1
                              TTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATT                                                                         >  1:5533556/1‑39
                              TTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATT                                                                         >  1:5524163/1‑39
                              TTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATT                                                                         >  1:1806734/1‑39
                              TTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCAT                                                                          >  1:6506244/1‑38
                               TTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTT                                                                       <  1:1637205/40‑1
                                     CGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAA                                              <  1:4874556/59‑1
                                     CGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAA                                              <  1:2510662/59‑1
                                       CTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAAAT                                            >  1:3271340/1‑59
                                       CTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAAAT                                            >  1:7864391/1‑59
                                       CTGCTTGAAAACCCATTGCGCATTGTCATTTTGATGATGAGGAAACCGAGCAGCAAAAT                                            >  1:7258244/1‑59
                                                                  ATTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTC     >  1:6408216/1‑71
                                                                  ATTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGT      >  1:5307474/1‑70
                                                                  ATTTTGATGATGAGGAAACCGAGCAGCAAAATGACAA                                       >  1:5653373/1‑37
                                                                  ATTTTGATGATGAGGAAACCGAGCAGCAAAATGAC                                         <  1:4881312/35‑1
                                                                   TTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTC     >  1:4166353/1‑70
                                                                   TTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTC     >  1:128088/1‑70
                                                                   TTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGT      >  1:914846/1‑69
                                                                   TTTTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCA                                 >  1:6582269/1‑42
                                                                     TTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTCTAT  >  1:7620020/1‑71
                                                                     TTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTCTA   <  1:2634094/70‑1
                                                                     TTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTCTA   <  1:6327854/70‑1
                                                                     TTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAA        <  1:6402804/65‑1
                                                                     TTGATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAA        <  1:7676512/65‑1
                                                                       GATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAG                 >  1:6977769/1‑54
                                                                                                                                            
TTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/48594‑48665
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttgATGATGAGGAAACCGAGCAGCAAAATGACAATGCGCAATGGGTTTTCAAGCAGCGTGCCAAAGTCTAT  <  AP009048/48685‑48618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.