| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 70061 = | 77 (0.950) | 278 (4.400) +CGCGTACAACT |
79/76 | NT | 80.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 236044 = | 101 (1.240) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 549 total aligned reads displayed.
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > AP009048/236044‑236113 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGTAACTCTATACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:2149552/1‑71AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAAGTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:3971834/1‑71AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC < 1:4894372/71‑1AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:2541441/1‑71 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG > 1:7456700/1‑71 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTA < 1:1559613/70‑1 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTA > 1:5971120/1‑70 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT < 1:4488525/69‑1 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT < 1:2006912/69‑1 GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTTTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:2404589/1‑70 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA < 1:2500388/71‑1 TACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:6495631/1‑57 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:4250854/71‑1 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1799356/71‑1 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACG < 1:3400238/54‑1 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:5781269/1‑71 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGC > 1:4072704/1‑54 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA < 1:4922210/70‑1 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGA < 1:6228696/70‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:7625065/71‑1 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGC > 1:5162278/1‑49 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:7837527/1‑71 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:5393257/1‑71 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTAC < 1:833745/52‑1 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGT < 1:4345557/50‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:175704/1‑71 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1621408/61‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAC > 1:502214/1‑43 ATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTA > 1:1118040/1‑47 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACC < 1:3186358/71‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:5215279/1‑70 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:5229854/67‑1 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAA > 1:5281658/1‑54 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:6594049/44‑1 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:4130157/1‑70 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCG < 1:7309502/41‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:3649035/1‑71 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:3825398/1‑71 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAA > 1:3454348/1‑45 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:7263972/1‑70 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC < 1:2565182/56‑1 CTCTCTACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT < 1:5581799/57‑1 TACTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTG < 1:5508987/48‑1 CTGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGAC < 1:4712551/48‑1 TGTTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTG > 1:3716982/1‑70 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA < 1:7118683/71‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2108389/69‑1 TTTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:2249266/1‑46 TTCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:7048236/1‑71 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:3366510/1‑70 TCTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:1902900/1‑70 CTCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT < 1:1469178/70‑1 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:4780401/68‑1 TCCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCT < 1:4422789/38‑1 CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:6332198/1‑71 CCATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:1062676/1‑71 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC < 1:1003569/71‑1 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTAC < 1:6252037/69‑1 CATACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAA > 1:2683354/1‑43 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:6869072/1‑71 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:759609/1‑45 TACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:3076672/1‑45 ACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1262627/1‑70 ACCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACAT > 1:695043/1‑38 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:6149134/1‑64 CCCGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:5062955/64‑1 CGTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGA < 1:7877914/71‑1 GTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1715758/1‑66 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGA < 1:3689305/69‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:7555442/47‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:5450678/43‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:4199130/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGAACTGCAATTACACGCCAGATCGT > 1:5675639/1‑71 TGGACGCGTACAACTCAAATCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC > 1:1678021/1‑71 GACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:738217/35‑1 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:5835673/71‑3 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAC > 1:227318/1‑71 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTG < 1:3234999/43‑1 CGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:938856/48‑1 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:1950087/1‑71 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:4532768/1‑71 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGA > 1:642993/1‑56 GTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGA > 1:3611927/1‑56 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:7069779/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGC > 1:6796542/1‑36 TACAACTCAAGTCTGACATAAATGACCGCTATGAGC < 1:7743586/36‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGC < 1:2983693/36‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:5878152/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG > 1:2640722/1‑56 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:1194635/44‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:1368238/44‑1 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAG < 1:5488239/51‑1 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAG < 1:6727112/51‑1 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC < 1:7179452/46‑1 CTCAAGTTTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA > 1:4621331/1‑62 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA > 1:6059205/1‑71 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:1862536/62‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:2945441/1‑43 TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:2771578/66‑3 TCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2815623/35‑1 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > AP009048/236044‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |