| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 144523 = | 68 (0.840) | 6 (0.080) | 3/88 | NT | 7.8% | intergenic (+51/‑54) | yadH/yadI | predicted transporter subunit/predicted PTS Enzyme IIA |
| ? | AP009048 | 144548 = | 81 (1.110) | intergenic (+76/‑29) | yadH/yadI | predicted transporter subunit/predicted PTS Enzyme IIA | |||||
GTAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/144596‑144523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGC > AP009048/144548‑144614 GTAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAG > 1:5561218/1‑71GTAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAG > 1:4257583/1‑71 TAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGG > 1:1522052/1‑71 TAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGG > 1:5905062/1‑71 TAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGG > 1:4434072/1‑71 TAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGG > 1:424823/1‑71 AATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG > 1:2254609/1‑71 AATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGG > 1:2458026/1‑70 ATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG > 1:7709483/1‑70 ATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG < 1:7171494/70‑1 AACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG > 1:7766872/1‑63 TCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG < 1:2480542/45‑1 TCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG < 1:2356575/45‑1 TCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGG < 1:1967780/45‑1 GAAAATCAGTCTACCCTGACCATTGTTGATAAAGGGT > 1:4549753/1‑37 GAAAATCAGTCTACCCTGACCATTGTTGATAAAGGGT > 1:6851218/1‑37 GTCTACCCTGACCATTGTTGATAAAGGGTAGACTGATTTTCGGCTAAGGAGGAA < 1:3261848/54‑1 GTCTACCCTGACCATTGTTGATAAAGGGTAGACTGATTTTCGGCTAAGGAGGAA < 1:7589019/54‑1 GTCTACCCTGACCATTGTTGATAAAGGGTAGACTGATTTTCGGCTAAGGAGGAA < 1:6989776/54‑1 CTACCCTGACCATTGTTGATAAAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGT > 1:1815315/1‑70 CTACCCTGACCATTGTTGATAAAGGGTAGACTGATTTTCGGCTAAGG > 1:5461888/1‑47 CCTGACCATTGTTGATAAAGGGTAGACTGATTTTC > 1:1658835/1‑35 gAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGG > 1:464046/2‑71 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGG > 1:2266088/1‑71 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGG < 1:5523146/71‑1 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGG < 1:4113467/71‑1 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTT‑GGTAATTACCTGTCACGATGACCGGGC > 1:168426/1‑71 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTT < 1:3215549/44‑1 AGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTA > 1:7367296/1‑40 TAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTT < 1:2758746/35‑1 GTAATTACCCAACCTAACATCGCCTTCCTCCTTAGCCGAAAATCAGTCTACCCTGACCATTGTTGATAAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/144596‑144523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggtAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTGGGTAATTACCTGTCACGATGACCGGGC > AP009048/144548‑144614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |