| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 224027 | NA (NA) | 9 (0.130) | 4/86 | NT | NA | noncoding (257/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 224038 | NA (NA) | noncoding (268/1542 nt) | rrsH | 16S ribosomal RNA | |||||
TCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/223955‑224027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggtgAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC < AP009048/224038‑223973 TCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAG > 1:4864250/1‑70 CGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT > 1:1268874/1‑71 CGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT > 1:5230510/1‑71 CGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGG > 1:510833/1‑70 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:1043271/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:4735171/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:4996074/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:5925685/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:661605/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:754353/1‑71 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT < 1:3792126/70‑1 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT < 1:7522173/70‑1 GCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGG > 1:3348633/1‑69 AAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:2633670/69‑1 AAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGT < 1:2768642/64‑1 AAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGT < 1:4445678/64‑1 AGACCAAAGAGGGGGACCTTCGGGCCTCATGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAG > 1:5280592/1‑65 AAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA < 1:6979034/59‑1 AAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGT < 1:1696016/58‑1 AGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:1715838/59‑1 AGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:2592501/59‑1 ACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA > 1:6037962/1‑49 CGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA > 1:7788743/1‑44 CGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA > 1:1680758/1‑44 CGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGT > 1:2053291/1‑43 TCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAG < 1:1537502/39‑1 TCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAG < 1:5509711/39‑1 TCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAG < 1:80290/39‑1 TCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA < 1:1247141/38‑1 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:6203304/1‑40 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG > 1:6994944/1‑40 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT > 1:2290014/1‑39 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGT > 1:6712026/1‑39 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGG > 1:800747/1‑38 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGG > 1:5041517/1‑38 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGG > 1:4834220/1‑38 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA < 1:5249122/36‑1 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA < 1:2355936/36‑1 TTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTA < 1:7327635/36‑1 TTGCCATCGGATGCGCCCAGATGGGATTAGCTAGTAGG > 1:1284702/1‑38 TGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCT < 1:1967508/55‑1 TGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:5040895/39‑1 TGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:3979795/39‑1 TGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG < 1:6202744/39‑1 CCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTAC > 1:7458430/1‑55 CCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTAC > 1:2472121/1‑55 CCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTAC > 1:904036/1‑55 CCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGAGCCGCTACCCCACCTAC > 1:1332483/1‑55 CCAGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTA < 1:7621914/41‑1 AGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTACT > 1:7191268/1‑41 AGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTACT > 1:1740871/1‑41 AGATGGGATTAGCTAGTAGGTGAGCCGTTACCCCACCTACT > 1:4927418/1‑41 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTC > 1:1630840/1‑71 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTC > 1:3754704/1‑71 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTC > 1:2383408/1‑71 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAA < 1:5637038/57‑1 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGAAGGCc > 1:3216470/1‑55 TAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTG < 1:1276135/40‑1 AGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC > 1:5935813/1‑71 AGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC > 1:4512947/1‑71 GGTGAGGCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACA < 1:6139132/44‑1 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATC < 1:4264428/46‑1 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGG > 1:556673/1‑40 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGG > 1:3824059/1‑39 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCAT > 1:5966939/1‑35 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCAT > 1:633899/1‑35 GGTGAGCCGTTACCCCACCTACTAGCTAATCCCAT > 1:4370344/1‑35 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCG < 1:2538741/62‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCC < 1:5070336/61‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGA < 1:1325943/48‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCC < 1:642371/46‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCA < 1:7740481/41‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCA < 1:7511724/41‑1 GTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCA < 1:5838891/41‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAG > 1:2966399/1‑64 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAG < 1:4201383/54‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:4440947/50‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGG < 1:6992828/50‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATG < 1:7444332/49‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACAT < 1:2251550/43‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACAT < 1:3813961/43‑1 TGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACAT < 1:3021080/43‑1 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC > 1:4826168/1‑67 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC > 1:6092689/1‑67 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAA > 1:2556089/1‑62 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAA > 1:99477/1‑62 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGA < 1:6572448/61‑1 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGA > 1:6423612/1‑54 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCA < 1:6275968/51‑1 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGC > 1:4517104/1‑50 GAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGG > 1:1922159/1‑37 TCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/223955‑224027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggtgAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCC < AP009048/224038‑223973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |