| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 225084 | NA (NA) | 10 (0.140) | 7/84 | NT | NA | noncoding (1314/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225092 | NA (NA) | noncoding (1322/1542 nt) | rrsH | 16S ribosomal RNA | |||||
Only 100 of 240 total aligned reads displayed.
AATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/225008‑225084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagtcGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCTC < AP009048/225092‑225023 ATGGCGCATACAAATAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:7293999/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:1056581/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:4706943/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:4576389/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:5025580/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:2145602/71‑1 ATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATT < 1:6608843/70‑1 TGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:7899452/1‑70 TGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:5947058/1‑70 TGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:493930/1‑70 TGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:3097203/1‑70 TGGCGCATACAAAGAGAAGCGACCT‑‑CGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAG > 1:7218260/1‑71 GGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:3707578/1‑69 GCGCATACAAAGAGAAGCGACCTCGCGAGAGCGAGCGGACCTCATGAAGTGCGTCGTAGTCCGGATTGGA < 1:5079590/70‑1 GCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAG > 1:4429304/1‑71 GCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAG < 1:1842357/71‑1 GCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:1671890/70‑1 CGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT < 1:1289243/71‑1 CGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT < 1:6416020/71‑1 CGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT < 1:5281653/71‑1 CGCATACAAAGAGAAGCGACCTAGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT < 1:28122/71‑1 GCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:3829621/71‑1 GCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:388451/71‑1 GCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC > 1:5349805/1‑71 GCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:6144812/71‑1 CATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:671054/70‑1 CATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:4499950/1‑65 TACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT < 1:7266098/67‑1 ACAAAGAGAAGAGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:2577632/67‑1 AAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGG < 1:3457913/61‑1 AAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:2354806/59‑1 AGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCGAGTTG > 1:1793226/1‑69 AGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGT > 1:2004476/1‑62 AGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:171257/1‑58 AGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:230972/1‑58 AGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:6655591/1‑56 AAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:7716755/56‑1 AAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:6195049/54‑1 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:6078274/54‑1 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:7035581/54‑1 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA > 1:5338020/1‑54 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA > 1:5876770/1‑54 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA > 1:2945751/1‑54 GCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:6041984/54‑1 GACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCGAGTTGCAGACTCCAA < 1:3581989/71‑1 GACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAG < 1:3863786/53‑1 GACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAG < 1:5205988/53‑1 ACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG > 1:2566889/1‑49 CTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC < 1:7612555/52‑1 TCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:4786903/48‑1 TCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:854293/48‑1 TCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCAGGATTGGAGTCGAGTTGCAGACTCCA < 1:46681/66‑1 CGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA < 1:1109803/47‑1 GAGAGAAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCGAGTTGCAGACTC > 1:6682317/1‑60 AGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCGAGTTGCAGAC > 1:4210947/1‑57 AGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:7392758/41‑1 GAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA > 1:6891221/1‑42 GAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGA > 1:2458247/1‑42 AGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCGAGTTGCAGAC < 1:225906/55‑1 AGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTG < 1:6829319/35‑1 AGTGCGTCGTAGTCCGGATTGGAGTCGAGTTGCAGACTCCAA > 1:2212965/1‑42 TGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG < 1:2780604/49‑1 GGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGC > 1:6218690/1‑71 GGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGC > 1:2613247/1‑71 GGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTT < 1:3799864/55‑1 GAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCT > 1:7832296/1‑71 GAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCT > 1:7074475/1‑71 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTT > 1:2883791/1‑71 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTT > 1:1571733/1‑71 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCT < 1:5373840/52‑1 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCT < 1:5254129/52‑1 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGA < 1:3239835/44‑1 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTT < 1:7436723/40‑1 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTC < 1:4265286/71‑1 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTC > 1:181451/1‑71 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTT > 1:1425966/1‑70 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGG < 1:267970/64‑1 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTC < 1:2725611/56‑1 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTC < 1:7819940/56‑1 GTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTA < 1:747335/40‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCT < 1:2986232/71‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCT < 1:4862017/71‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCT < 1:5552979/71‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCT < 1:1855703/71‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTC > 1:2507740/1‑70 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCG < 1:7148667/60‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCG < 1:581679/60‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGAGAGGTCGCTTCT < 1:837237/71‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTT < 1:736681/51‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:1001840/47‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:6557432/47‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:3298848/47‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATG < 1:1226031/41‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTA < 1:754818/39‑1 TCGAGTAGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCCCGAGGTCGCTTCT < 1:4375134/71‑1 CGAGTTGCAGACTCCAATCCTGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCTC > 1:1606750/1‑71 CGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGA > 1:5620122/1‑60 CGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGA > 1:404052/1‑60 CGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCG < 1:4348787/59‑1 CGAGTTGCAGACTCAAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGC < 1:6340592/58‑1 AATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/225008‑225084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagtcGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCTC < AP009048/225092‑225023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |