| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225818 = | NA (NA) | 13 (0.170) | 7/92 | NT | NA | noncoding (60/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 225835 = | NA (NA) | noncoding (77/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 102 total aligned reads displayed.
CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225890‑225818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACA > AP009048/225835‑225904 CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:1164574/71‑1CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:3820764/71‑1CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:6206540/71‑1CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:289613/71‑1CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:6582608/71‑1CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:7271902/71‑1CTGGGTTTCCCCATTCGGAAATCGACGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:6439517/71‑1 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:7803593/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:5374200/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:6409591/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:7934881/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:4824630/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:1356047/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:3671893/1‑71 TGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:6640956/1‑71 GGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:5563016/1‑70 GGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:3518172/1‑70 GGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:2047372/1‑70 GGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:7853031/1‑70 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:6956653/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:2457364/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:7271633/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:4450370/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:3758840/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:6305310/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:31243/70‑1 GGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:5598259/69‑1 TTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:3806229/1‑67 TTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG > 1:3915283/1‑67 CCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTGCCGACGCTTATCGCAGATTAGC < 1:2090576/63‑1 TTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:3651444/59‑1 TTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:218224/59‑1 TCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:6554930/1‑57 GAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA < 1:1143775/54‑1 CGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:7178073/1‑49 CGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:4401062/1‑49 CGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:1535491/1‑49 GCCGGTTATAACGGTTCATATCACCTTACCGACTCTTATCGCAGATTAGC > 1:5652083/1‑50 GCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:4205805/1‑48 GGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:7848917/1‑45 TTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:918814/44‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:7294396/43‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:6539932/43‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:1389869/43‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:5057947/43‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:2558217/43‑1 ATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC < 1:4735601/43‑1 TAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:5318287/41‑1 TAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:2644659/41‑1 TAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:7132620/41‑1 TAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:4633593/41‑1 AACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:2906823/40‑1 AACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:3748951/40‑1 ACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:4429091/39‑1 ACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:129865/39‑1 ACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:3085165/39‑1 ACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAG < 1:1286684/39‑1 GTTCATATCACCTTACCGACGCTTATCGCAGATTA > 1:6880279/1‑35 CGACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACC < 1:4660734/51‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGA < 1:563023/69‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGA < 1:3022237/69‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCG < 1:6933369/61‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCG < 1:3631926/61‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCG < 1:6762339/61‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTAT < 1:3494688/46‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTAT < 1:4360792/46‑1 GACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTAT < 1:7321734/46‑1 ACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAAC > 1:358560/1‑71 ACGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAA > 1:3497469/1‑70 CGCTTATCGCAGATTAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACC > 1:6572209/1‑71 TAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTG > 1:5792472/1‑62 AGCGTCGGTAAGGTGATATGAACCGTTATAATCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA < 1:1909492/71‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGTGAA < 1:331743/53‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA < 1:738068/71‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA < 1:7280967/71‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA > 1:7470323/1‑71 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA < 1:3890444/71‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGAC < 1:2565367/70‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGA > 1:4878323/1‑69 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTT > 1:4955253/1‑66 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTT > 1:2254597/1‑66 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAA < 1:7466846/53‑1 AGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAA < 1:2514784/53‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCt < 1:6661108/43‑2 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACAC < 1:6647507/71‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACAC < 1:7640638/71‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACAC < 1:4611348/71‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACAC < 1:4449894/71‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACAC < 1:3939074/71‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGA < 1:6818055/68‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGG < 1:4140864/49‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGG < 1:5652340/49‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCG < 1:6511259/43‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCG < 1:518435/43‑1 GCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTC < 1:1373362/41‑1 CGTCGGTAAGGTTATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACA < 1:2714981/69‑1 CGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACA > 1:1542245/1‑71 CGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGAC < 1:7618659/68‑1 CGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAAT < 1:3399443/45‑1 CGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAAT < 1:3784809/45‑1 CTGGGTTTCCCCATTCGGAAATCGCCGGTTATAACGGTTCATATCACCTTACCGACGCTTATCGCAGATTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225890‑225818‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACA > AP009048/225835‑225904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |