New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 226279	NA (NA)	9 (0.120)	6/92	NT	9.4%	noncoding (521/2904 nt)	rrlH	23S ribosomal RNA
	?	AP009048	= 226310	92 (1.130)					noncoding (552/2904 nt)	rrlH	23S ribosomal RNA

GAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTacg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226210‑226279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCA  <  AP009048/226310‑226257                                                                                                                              GAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       >  1:6837164/1‑71  AACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:6439687/71‑1  AACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:610381/71‑1  AACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:6757674/1‑71  AACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:7091357/1‑71  AACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:3920862/1‑71    CCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACG                                                     >  1:4109692/1‑70    CCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACG                                                     >  1:6628085/1‑70    CCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACG                                                     <  1:6464166/70‑1    CCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:6734510/1‑69      AGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:5194588/1‑67      AGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:4912093/1‑67      AGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:6796984/1‑67      AGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:7819038/1‑67               AGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      >  1:1978233/1‑58               AGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       >  1:397269/1‑57                  GAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:7215600/55‑1                    AAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       <  1:2932515/52‑1                           AAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       >  1:3575047/1‑45                            AAGAACCCCGGCGAGGTGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:6182766/45‑1                             AGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCATGCTCCCACTGCTTGTAC                           <  1:7452879/71‑1                              GAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCGTGCTCCCACTGCTTG                              <  1:7915282/67‑1                              GAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCGTGCTCCCACTGCTTG                              <  1:2394356/67‑1                              GAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCCAAGCGTGCTCCCACTGCTTGTACG                          <  1:5930812/71‑1                               AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:1803993/42‑1                               AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:2788560/42‑1                               AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTAC                                                      <  1:5755934/42‑1                               AACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       <  1:3345546/41‑1                                 CCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACG                                                     >  1:1103327/1‑41                                 CCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACG                                                     >  1:4553757/1‑41                                  CCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCATGCTCCCACT                                   <  1:3922802/58‑1                                  CCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTA                                                       <  1:7307549/38‑1                                   CCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCGTGCTCCCACTGCTTGTACGTAC                       >  1:5017502/1‑69                                     GGCGAGTGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCGTGCTCCCACTGCTTGTACGTAC                       <  1:409489/67‑1                                     GGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCGTGCTCCCACTGCTTGTAC                           >  1:4352168/1‑63                                     GGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTACGCCTAAGCGTGCTCCCACTGCTTGTAC                           >  1:4336951/1‑63                                                                        CGCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCA  >  1:6714369/1‑53                                                                        CGCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAGG            >  1:7152527/1‑43                                                                        CGCCTAAGCATGCTCCCACTGCTTGTACGTACACGGGTTCAGGTTCTTTTTC   >  1:1486675/1‑52                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTT       <  1:2074707/47‑1                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:7152365/1‑41                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:528305/1‑41                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:4549344/1‑41                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:2932673/1‑41                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:1949896/1‑41                                                                         GCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAG             >  1:844986/1‑41                                                                                                                              GAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCGTGTacg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226210‑226279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTAAGCATGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCA  <  AP009048/226310‑226257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.