New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 227287 =NA (NA)5 (0.070) 3/90 NT NA noncoding (1529/2904 nt) rrlH 23S ribosomal RNA
?AP009048 227316 = NA (NA)noncoding (1558/2904 nt) rrlH 23S ribosomal RNA

Only 100 of 102 total aligned reads displayed.

ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/227360‑227287
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  AP009048/227316‑227385
                                                                                                                                                
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:5703920/1‑71
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:6756380/1‑71
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:2378824/1‑71
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:1584958/1‑71
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:5556003/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:7161863/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:7305461/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          <  1:2377891/71‑1
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:7903817/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          <  1:4229642/71‑1
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:5477789/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:6536813/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          <  1:4946766/71‑1
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG                                                                          >  1:49241/1‑71
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           <  1:4381466/70‑1
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:1511942/1‑70
 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           <  1:2647864/70‑1
  GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCAGCGTAGT                                                                           <  1:3533/69‑1
  GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         >  1:1643314/1‑71
  GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         >  1:3536329/1‑71
  GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         >  1:4847185/1‑71
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        >  1:4635141/1‑71
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        <  1:6721419/71‑1
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        <  1:4063320/71‑1
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        <  1:4679301/71‑1
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        >  1:4167889/1‑71
   ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        <  1:171076/71‑1
   ATTTGATGTAACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        <  1:6399441/71‑1
    TTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:1275257/1‑67
              CCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:3191851/1‑57
                TGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:2367776/1‑55
                    GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:7140534/1‑51
                    GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:4139624/1‑51
                    GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:2286437/1‑51
                    GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:3862655/1‑51
                     CTTAGAGGCTTTTCCTGGAAGCAGGGCATATGTTGCTTCACCACCGTAGTGCC                                                                        >  1:7286114/1‑53
                       TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         >  1:3890289/1‑50
                       TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:4387682/1‑48
                       TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:6180091/1‑48
                       TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:595125/1‑48
                         GAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           <  1:190505/46‑1
                              TTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:5330890/1‑41
                              TTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:1882753/1‑41
                              TTTTACTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        >  1:3234880/1‑44
                                TTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:3437679/1‑39
                                   CTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:2094736/1‑36
                                   CTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT                                                                           >  1:6602397/1‑36
                                    TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        >  1:6523704/1‑38
                                    TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC                                                                        >  1:1477885/1‑38
                                    TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         <  1:1166017/37‑1
                                    TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         <  1:660394/37‑1
                                    TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC                                                                         <  1:447151/37‑1
                                      GAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAA                                      >  1:1251199/1‑70
                                               CATTTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCG                            >  1:2857835/1‑71
                                                  TTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTC                                                    >  1:18480/1‑44
                                                  TTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTC                                                    >  1:5396124/1‑44
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     >  1:5562688/1‑71
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     <  1:1721816/71‑1
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     <  1:6844765/71‑1
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     >  1:4301812/1‑71
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     <  1:6013646/71‑1
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGG      <  1:5115137/70‑1
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAG          <  1:4885968/66‑1
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAG          >  1:2636054/1‑66
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCC                       >  1:860172/1‑53
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAAT                              >  1:1085859/1‑46
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAAT                              >  1:6512893/1‑46
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA                               >  1:4684147/1‑45
                                                                      TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA                               >  1:3609768/1‑45
                                                                      TGCACTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAGATCGTACCCCAAACCGACACAGGTGGT     >  1:6479001/1‑71
                                                                       GCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAA                   <  1:4369752/56‑1
                                                                       GCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA                               <  1:6083433/44‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:2532514/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:133355/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:6196148/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:2651456/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:5931708/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:5826075/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:3192368/71‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:515260/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:617141/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:211612/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:1594208/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:569466/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:544617/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:6554614/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:6591840/70‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT     >  1:435251/1‑69
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA                               <  1:490589/43‑1
                                                                        CCCTGCTTCCAGGAAAAGCCTCTAAGCATCACGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC    <  1:6826956/70‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  1:3756995/1‑71
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  1:3295108/1‑71
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  1:3097028/1‑71
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  <  1:3065812/71‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  1:2605521/1‑71
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  <  1:2241765/71‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  <  1:109185/71‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA   <  1:3098448/70‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCA                     <  1:4211768/52‑1
                                                                         CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCA                     <  1:3856679/52‑1
                                                                                                                                                
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/227360‑227287
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG  >  AP009048/227316‑227385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.