| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 227287 = | NA (NA) | 5 (0.070) | 3/90 | NT | NA | noncoding (1529/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 227316 = | NA (NA) | noncoding (1558/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 102 total aligned reads displayed.
ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/227360‑227287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > AP009048/227316‑227385 ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:5703920/1‑71ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:6756380/1‑71ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:2378824/1‑71ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:1584958/1‑71ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:5556003/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:7161863/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:7305461/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG < 1:2377891/71‑1 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:7903817/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG < 1:4229642/71‑1 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:5477789/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:6536813/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG < 1:4946766/71‑1 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTG > 1:49241/1‑71 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT < 1:4381466/70‑1 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:1511942/1‑70 CGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT < 1:2647864/70‑1 GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCAGCGTAGT < 1:3533/69‑1 GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC > 1:1643314/1‑71 GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC > 1:3536329/1‑71 GATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC > 1:4847185/1‑71 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC > 1:4635141/1‑71 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC < 1:6721419/71‑1 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC < 1:4063320/71‑1 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC < 1:4679301/71‑1 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC > 1:4167889/1‑71 ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC < 1:171076/71‑1 ATTTGATGTAACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC < 1:6399441/71‑1 TTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:1275257/1‑67 CCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:3191851/1‑57 TGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:2367776/1‑55 GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:7140534/1‑51 GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:4139624/1‑51 GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:2286437/1‑51 GCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:3862655/1‑51 CTTAGAGGCTTTTCCTGGAAGCAGGGCATATGTTGCTTCACCACCGTAGTGCC > 1:7286114/1‑53 TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC > 1:3890289/1‑50 TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:4387682/1‑48 TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:6180091/1‑48 TAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:595125/1‑48 GAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT < 1:190505/46‑1 TTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:5330890/1‑41 TTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:1882753/1‑41 TTTTACTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC > 1:3234880/1‑44 TTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:3437679/1‑39 CTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:2094736/1‑36 CTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT > 1:6602397/1‑36 TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC > 1:6523704/1‑38 TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC > 1:1477885/1‑38 TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC < 1:1166017/37‑1 TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC < 1:660394/37‑1 TGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGC < 1:447151/37‑1 GAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAA > 1:1251199/1‑70 CATTTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCG > 1:2857835/1‑71 TTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTC > 1:18480/1‑44 TTGTTGCTTCAGCACCGTAGTGCCCTGCTTCCAGGAAAAGCCTC > 1:5396124/1‑44 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT > 1:5562688/1‑71 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT < 1:1721816/71‑1 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT < 1:6844765/71‑1 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT > 1:4301812/1‑71 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT < 1:6013646/71‑1 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGG < 1:5115137/70‑1 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAG < 1:4885968/66‑1 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAG > 1:2636054/1‑66 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCC > 1:860172/1‑53 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAAT > 1:1085859/1‑46 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAAT > 1:6512893/1‑46 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA > 1:4684147/1‑45 TGCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA > 1:3609768/1‑45 TGCACTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAGATCGTACCCCAAACCGACACAGGTGGT > 1:6479001/1‑71 GCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAA < 1:4369752/56‑1 GCCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA < 1:6083433/44‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:2532514/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:133355/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:6196148/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:2651456/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:5931708/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:5826075/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:3192368/71‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:515260/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:617141/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:211612/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:1594208/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:569466/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:544617/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:6554614/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:6591840/70‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGT > 1:435251/1‑69 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAA < 1:490589/43‑1 CCCTGCTTCCAGGAAAAGCCTCTAAGCATCACGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTC < 1:6826956/70‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > 1:3756995/1‑71 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > 1:3295108/1‑71 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > 1:3097028/1‑71 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG < 1:3065812/71‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > 1:2605521/1‑71 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG < 1:2241765/71‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG < 1:109185/71‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCA < 1:3098448/70‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCA < 1:4211768/52‑1 CCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCA < 1:3856679/52‑1 ACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/227360‑227287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCTGCTTCCAGGAAAAGCCTCTAAGCATCAGGTAACATCAAATCGTACCCCAAACCGACACAGGTGGTCAG > AP009048/227316‑227385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |