| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 227753 | NA (NA) | 6 (0.080) | 3/92 | NT | NA | noncoding (1995/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 227788 | NA (NA) | noncoding (2030/2904 nt) | rrlH | 23S ribosomal RNA | |||||
TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/227681‑227753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG < AP009048/227788‑227719 TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:1336407/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:7899915/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:1522289/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:3213456/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:4128252/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:6911928/71‑1TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:4528568/1‑71TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:2438490/71‑1 CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC > 1:3920253/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:422022/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:5416717/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:5425644/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:2555901/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:5904365/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:2293166/1‑71 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT < 1:4337294/71‑1 CTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC > 1:381911/1‑70 TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTT > 1:6811303/1‑71 TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTT > 1:4052729/1‑71 TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTT > 1:3739384/1‑71 TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTT > 1:1604968/1‑71 TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:469938/1‑70 AAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:4584125/1‑69 AAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:4377173/1‑69 AGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:2245913/1‑68 AGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:3038050/1‑68 AGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:1618618/66‑1 AGGTAGCGAAATTCCTTGTCGGGTAAGTTACGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC > 1:6946435/1‑67 GGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:922821/65‑1 GGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:176096/65‑1 ATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:666609/1‑56 ATTACTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:3333195/1‑56 TTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:7184765/55‑1 TTCCTTGTCGCGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT < 1:2461644/55‑1 TCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:4593212/1‑54 TCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:4214931/1‑54 CCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:3097639/1‑55 CCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:6156674/1‑55 CCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:6166947/1‑55 CCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGT‑ATGATGGCCAGGCTGTCT > 1:2478852/1‑54 CTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:3372893/1‑54 TTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC < 1:1289546/52‑1 TTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC > 1:3987024/1‑52 TTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC < 1:6884652/52‑1 TGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:929468/1‑50 TGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:5757390/1‑50 TGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGT > 1:575396/1‑50 TCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT < 1:1114180/50‑1 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTTCACAGCGAGTTCAATTTCACTGAGTC > 1:7129147/1‑71 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:1624710/1‑44 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:2382393/1‑44 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:6900945/1‑44 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:7736891/1‑44 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:2978750/1‑44 AAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT > 1:5359104/1‑44 AAGATCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTTCACAGCGAGTTCAATTTCACTGAGT > 1:4728514/1‑70 CCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTC > 1:7181008/1‑38 CCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGA < 1:7932899/71‑1 TGCACGAATGGCGTAATGATGGCCAGGCTGTCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGA < 1:5851854/69‑1 TGCACGAATGGCGTAATGATGGCCAGGCTGTCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGA < 1:3124676/69‑1 TGATGGCCAGGCTGGCTTCACAGCGAGTTCAATTTCACTGAGT < 1:2470262/43‑1 GGCTGTCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGA < 1:6759288/44‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGC < 1:774063/70‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTG > 1:6704143/1‑69 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTG > 1:5568939/1‑69 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTG > 1:4981573/1‑69 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGC < 1:295663/61‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCAT < 1:4557362/56‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCAT < 1:6729240/56‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATC < 1:4190063/54‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCAT < 1:5059680/53‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA < 1:1850749/43‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA < 1:3602841/43‑1 TCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGG < 1:1052348/38‑1 CTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAG > 1:1386208/1‑71 CTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAG > 1:2368206/1‑71 CTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTG > 1:6231537/1‑68 CTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA < 1:2319434/42‑1 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:6497558/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:4272447/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:862783/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:2440506/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:5808823/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:1801790/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:853193/1‑71 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAG > 1:5677911/1‑70 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAG > 1:4843498/1‑70 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTC > 1:4067743/1‑64 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTC > 1:2729116/1‑64 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTC > 1:3961916/1‑64 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTA > 1:6452860/1‑56 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTA > 1:7084360/1‑56 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCAT < 1:5722606/54‑1 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCA > 1:6376702/1‑53 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCA > 1:2493770/1‑53 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA > 1:7001140/1‑41 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA > 1:1940867/1‑41 TTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACA > 1:4217564/1‑41 TTCACAGCAAGTTCAATTTCACTGAGTCTCGGGTGTAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG > 1:7432642/1‑71 TCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/227681‑227753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGG < AP009048/227788‑227719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |