| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 228022 | NA (NA) | 6 (0.090) | 4/84 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 136 total aligned reads displayed.
TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/227946‑228022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < AP009048/228033‑227964 TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:2855593/1‑71TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:6357770/1‑71TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:695256/1‑71TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:4835758/1‑71TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:7518626/1‑71TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC > 1:4396271/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:4030040/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:5682801/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:2814138/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:1641358/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:1279383/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT > 1:4168341/1‑71 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC < 1:2564140/70‑1 TGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC < 1:6929750/70‑1 GATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTC > 1:6178339/1‑71 GATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT < 1:4652795/70‑1 ATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC < 1:3274203/71‑1 ATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC < 1:7657058/71‑1 ATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTC < 1:5761574/70‑1 TGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCT > 1:2893166/1‑71 TGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCT > 1:250676/1‑71 TGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCT > 1:5582250/1‑71 TGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCT < 1:6272311/71‑1 TTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC < 1:6371325/71‑1 TTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC < 1:5339018/70‑1 TTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC < 1:1132400/70‑1 TTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC < 1:1432539/70‑1 TCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC > 1:1651191/1‑70 TCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGCGGGTAGTTTGACTGGGGCGGTCTCCTCC > 1:3901853/1‑70 CTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC > 1:1238846/1‑69 CGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC < 1:7760109/62‑1 CGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT < 1:434250/60‑1 TTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:122142/1‑62 GACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:1813690/1‑60 GACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:5457208/1‑60 CCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT < 1:1714123/53‑1 CGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:1399383/1‑56 GTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:3606229/1‑55 GTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:3615635/1‑55 GTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:6128618/1‑55 TCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:3440173/1‑51 TCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC < 1:5252457/49‑1 TCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC < 1:1152734/46‑1 TCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC < 1:1705501/46‑1 CGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC < 1:1896661/47‑1 TTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCT < 1:7370183/44‑1 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCGTTACTCTTTAGGAGG < 1:2941739/58‑1 CAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCC > 1:1038885/1‑36 AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:690866/1‑37 AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTC > 1:2407327/1‑37 TAGTTTGACTGGGGCGGTCTCCTCCGTTACTCTTTAGGAG > 1:4594377/1‑40 AGTTTGACTGGGGCGGTCTCCTCCGTTACTCTTTAGGAGGA < 1:498038/41‑1 CTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGAT < 1:1229151/71‑1 CTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGAT > 1:6846143/1‑71 CTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGA < 1:5218498/52‑1 TCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGAT > 1:6112238/1‑70 TCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAA < 1:277702/63‑1 TCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTG < 1:5314360/56‑1 TCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCA < 1:6738994/49‑1 TCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAA < 1:2667981/39‑1 CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTA > 1:7568768/1‑71 CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTA > 1:2690354/1‑71 CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGAT < 1:4960891/69‑1 CCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGT < 1:3921883/56‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAAGTACCCACCAGACACTGTCCGCAACCCGGATTAC < 1:1492689/71‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACTCGGATT < 1:1022402/69‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC > 1:3712858/1‑71 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC < 1:1989032/71‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC > 1:4346016/1‑71 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC < 1:1703424/71‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC > 1:5276616/1‑71 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC > 1:5210691/1‑71 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC < 1:1066028/71‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTA < 1:1909469/70‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTA < 1:1992888/70‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAAACCGGATTA < 1:5986018/70‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCA < 1:3721145/60‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGT > 1:5717260/1‑55 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGT < 1:3222435/55‑1 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACA > 1:591528/1‑51 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTAC > 1:5648897/1‑41 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTAC > 1:7540536/1‑41 CTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAA > 1:7909652/1‑37 CTCCGTTACTCTTTAGGAGGAGACCGCCCAAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTAC < 1:7045709/71‑1 TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACG > 1:4024727/1‑71 TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACG > 1:712663/1‑71 TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGA > 1:7265173/1‑66 TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTC > 1:3216333/1‑55 TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGA > 1:579851/1‑48 CCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGG > 1:6863169/1‑71 CCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGT < 1:3910400/53‑1 CCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAA > 1:4927572/1‑35 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < 1:21458/71‑1 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG > 1:7823216/1‑71 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < 1:7714647/71‑1 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < 1:5360554/71‑1 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < 1:3111282/71‑1 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGG < 1:7064241/70‑1 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGG > 1:265486/1‑70 CGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGG < 1:4048747/70‑1 TTGATGTTCTAACGTTGACCCGTAATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/227946‑228022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGG < AP009048/228033‑227964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |