| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 228744 | 0 (0.000) | 13 (0.180) | 5/86 | NT | 100% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | AP009048 | 3596200 = | NA (NA) | intergenic (‑36/+58) | rrfA/rrlA | 5S ribosomal RNA/23S ribosomal RNA | |||||
CCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/228669‑228744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCT > AP009048/3596200‑3596269 CCGAAGCTGTTTTGGCGGTTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:6351274/71‑1CCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:7647162/1‑71CCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:3550016/71‑1 gGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 1:6243621/2‑71 CGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 1:6116681/1‑71 AAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:660526/71‑1 AAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:6087009/71‑1 GTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:3593623/1‑63 TTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 1:7611171/1‑66 TGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:5868144/64‑1 GGCGGATTGAGAGAAGATTTGCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:108095/63‑1 GCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:3953392/1‑59 GATTGTGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:1838086/57‑1 TTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 1:4743796/1‑57 TTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:6775006/1‑52 AGAGAAGATTTTCAGCCTGATGCAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:7902179/54‑1 AGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:7226620/52‑1 GAAGATTTTCAGCCTTATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:3115333/1‑48 GAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:2735829/1‑48 GAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:6219837/1‑48 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:5716047/1‑49 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:438912/1‑49 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:3338727/48‑1 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:3767217/48‑1 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:4967981/48‑1 AAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:4958640/48‑1 TTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA < 1:539548/44‑1 TCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:7461163/1‑38 CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG > 1:1385856/1‑37 TGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:1628202/37‑1 GATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:5416613/36‑1 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTC > 1:5566108/1‑71 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTC > 1:7654915/1‑71 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTC > 1:2558034/1‑71 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTC > 1:2701886/1‑71 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCG > 1:4857632/1‑71 GAACGCAGAAGCGGTCTGATTTAATCTTTATCAGGCTGA < 1:364305/39‑1 GAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTT < 1:4217290/46‑1 GAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTT < 1:6744485/46‑1 GAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGA < 1:6578730/39‑1 GAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGA < 1:7796930/39‑1 GAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGA < 1:7470664/39‑1 AACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAAT > 1:4266688/1‑42 AACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAA < 1:7086716/39‑1 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCA > 1:6661956/1‑46 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAA < 1:2560332/39‑1 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTA < 1:7927900/70‑1 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTA < 1:4219625/70‑1 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTT > 1:5164304/1‑69 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTT > 1:7309925/1‑69 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTT > 1:6162596/1‑61 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTC > 1:7884619/1‑55 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCA > 1:1444803/1‑37 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCA > 1:3027160/1‑37 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC > 1:1218172/1‑36 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAA > 1:3979800/1‑46 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAA < 1:3764235/44‑1 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAA < 1:5939016/44‑1 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCAGCCAAAACACCTTCGGCGTTGTAAGGTTAAG > 1:2490327/1‑70 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCC > 1:1616410/1‑71 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGC < 1:7835550/70‑1 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAA < 1:4674616/68‑1 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAA < 1:4594598/45‑1 TTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCT > 1:7322905/1‑71 TTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAA > 1:4639135/1‑44 CCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/228669‑228744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCT > AP009048/3596200‑3596269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |