| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 239208 = | 34 (0.420) | 4 (0.060) | 3/84 | NT | 12.1% | coding (19/189 nt) | yafF | conserved hypothetical protein |
| ? | AP009048 | 1534530 = | NA (NA) | coding (1001/1137 nt) | ydcC | conserved hypothetical protein | |||||
CTCATTCGTCAAAATATTAATAGCAATGTGCCGTATCCCTGAAAATAATTCTGCTGCGTTTCCTCTTCTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/239282‑239208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattttCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGACGT > AP009048/1534530‑1534597 CTCATTCGTCAAAATATTAATAGCAATGTGCCGTATCCCTGAAAATAATTCTGCTGCGTTTCCTCTTCTTA > 1:1580620/1‑71 CATTCGTCAAAATATTAATAGCAATGTGCCGTATCCCTGAAAATAATTCTGCTGCGTTTCCTCTTCT > 1:7782228/1‑67 CTGAAAATAATTCTGCTGCGTTTCCTCTTCTTATTTT < 1:654570/37‑1 CTGAAAATAATTCTGCTGCGTTTCCTCTTCTTATTTT < 1:6873312/37‑1 AAATAATTCTGCTGCGTTTCCTCTTCTTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACG < 1:2917607/68‑1 AATAATTCTGCTGCGTTTCCTCTTCTTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGAC < 1:1211733/66‑1 TCTGCTGCGTTTCCTCTTCTTATTTTCAGGGATACGGCACATTGC > 1:1642110/1‑45 TCTGCTGCGTTTCCTCTTCTTATTTTCAGGGATACGGCACATTGC > 1:648860/1‑45 TTATTTTCAGGGATACGGTACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAG < 1:981493/64‑1 TTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAG < 1:3496239/71‑1 TTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAG < 1:6866797/71‑1 TTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATA > 1:6857325/1‑49 TTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGA < 1:3131674/47‑1 TATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGA > 1:7131355/1‑71 TATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGA > 1:2206/1‑71 TATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGA > 1:1781892/1‑71 TATTTTCAGGGATACGGCACATTGCTATTAATATTT < 1:5784924/36‑1 TATTTTCAGGGATACGGCACATTGATATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGA > 1:2051987/1‑71 ATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGAC > 1:1273053/1‑71 ATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGA > 1:2322115/1‑70 ATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACG < 1:5411076/40‑1 TTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGAC < 1:2724323/70‑1 TTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGACGT > 1:7277637/1‑70 TTCAGGGATACGGCACATTGCTATTAATATTTTGA > 1:1339368/1‑35 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGACGT > 1:3741998/1‑69 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTT < 1:3447894/62‑1 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGT > 1:3156631/1‑47 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATA < 1:4919144/43‑1 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATA < 1:3214097/43‑1 TCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATA < 1:2609094/43‑1 CTCATTCGTCAAAATATTAATAGCAATGTGCCGTATCCCTGAAAATAATTCTGCTGCGTTTCCTCTTCTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/239282‑239208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattttCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGATAAGGTATTCAAGGCAGGGTTAAGACGT > AP009048/1534530‑1534597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |