| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 291837 | 91 (1.120) | 4 (0.050) | 4/90 | NT | 5.0% | coding (336/627 nt) | yagK | conserved hypothetical protein |
| ? | AP009048 | = 291858 | 67 (0.900) | coding (315/627 nt) | yagK | conserved hypothetical protein | |||||
ATCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/291766‑291837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACCTCGGGGATTACGAT < AP009048/291858‑291792 ATCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACA < 1:5615880/70‑1 TCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG > 1:5385693/1‑71 TCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG > 1:4203073/1‑71 TCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG > 1:3853741/1‑71 CATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG > 1:1280281/1‑70 ATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG > 1:2158276/1‑69 CCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAACGTCTTTGTTGAACAACA > 1:6121075/1‑65 TAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAAC > 1:2212088/1‑59 TAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAAC > 1:6365806/1‑59 TAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAAC > 1:3444189/1‑59 TAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAAC > 1:1066375/1‑59 ATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAAC > 1:5807964/1‑52 GTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGGTAAATGCCACTATCACATT > 1:6151202/1‑71 ATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGGTAAATGCCACTATCACATTTGC < 1:3825924/68‑1 ATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGGTAAATGCCACTATCACATTTGCCTGTTGTTC < 1:3743409/71‑1 AGCGTCTTTGTTGAACAACAGGTAAATGCCACTATCACATTTGC > 1:2256483/1‑44 AGGTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACCTCGGGGATTACGAT > 1:7441252/1‑70 AGGTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTA > 1:2778937/1‑51 AGGTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTA > 1:756250/1‑51 GTAAATGCCACTATCACATTTGCCTGTTGTTCAACTAAGACGCTTACTACCACCTCG > 1:730821/1‑57 GTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACCTCG > 1:1390630/1‑57 GTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACC < 1:4581018/54‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACC < 1:6116742/54‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:1602461/35‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:5926997/35‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:5937012/35‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:3919776/35‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:3467311/35‑1 GTAAATGCCACTATCACATTTGCCTGTTGTTCAAC < 1:6370176/35‑1 ATCATCCCTCTAAGGTTATCGTCCTGATCGTAATCCCCGAGGTGGTAGTAAGCGTCTTTGTTGAACAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/291766‑291837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTAAATGCCACTATCACATTTGCCTGTTGTTCAACAAAGACGCTTACTACCACCTCGGGGATTACGAT < AP009048/291858‑291792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |