| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 314453 = | 64 (0.790) | 54 (0.690) +TC |
32/94 | NT | 63.8% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | 3932928 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 122 total aligned reads displayed.
TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > AP009048/3932928‑3932996 || TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:110393/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:7724877/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:7668617/1‑70TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:5389555/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:748397/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:4386144/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:4424293/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:285885/1‑69 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:3770460/1‑69 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:2424470/1‑69 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGAAAGAT > 1:6828019/1‑69 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATC > 1:443041/1‑70 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:7144790/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:3369910/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:2717411/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:4568136/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:5867797/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:7749393/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:6661020/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC > 1:2766816/1‑69 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATC > 1:4704315/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:134141/62‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:4670616/61‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCG > 1:167607/1‑71 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCG > 1:6209855/1‑71 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCC < 1:538678/70‑1 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:4874063/1‑61 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:4883466/1‑61 TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:3696894/59‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCTCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCC > 1:1441231/1‑71 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:98329/57‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:5861879/56‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:3760139/56‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:7006114/55‑1 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGC > 1:5228788/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:7075643/54‑1 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:4085472/54‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:6312335/53‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:7078287/53‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:4600928/53‑1 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC > 1:7321826/1‑52 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTG > 1:7588172/1‑70 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTG < 1:4764437/70‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGCTAAGATCAGTGATCCCGGGCCTCGCTG < 1:6120855/70‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:2579435/70‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2139621/48‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2308668/48‑1 TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2260680/48‑1 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTTAGATCA < 1:6021479/48‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAG < 1:2903641/71‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:4511362/46‑1 GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:1388900/1‑46 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTG < 1:6396736/71‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:7922229/42‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:609158/42‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:847966/41‑1 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1637584/1‑70 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA > 1:2033050/1‑42 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:7527057/40‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:1007154/1‑71 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA < 1:7795135/70‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA < 1:3566720/70‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:2353241/69‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:1888206/69‑1 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAA > 1:5667599/1‑59 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAA > 1:6104001/1‑59 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGG < 1:1901581/46‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCC > 1:5565683/1‑40 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:960850/70‑1 GTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGG > 1:7627614/1‑70 TGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAC < 1:5478721/67‑1 ACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:1311476/1‑70 CTATTGCTGGGTAAGTTCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:1763576/70‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCT < 1:5552508/71‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCT < 1:1358549/71‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAG > 1:4717429/1‑59 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:1864251/40‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:3478331/40‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2278180/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGCCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:5788398/1‑71 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1494934/1‑70 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:6700125/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:5885189/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:6444467/70‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA < 1:6757524/69‑1 GGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTC > 1:2342859/1‑71 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:1157240/1‑71 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:2577234/1‑71 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:6115845/1‑71 AAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:3642668/1‑48 AAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:2202646/1‑48 AGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCT > 1:536524/1‑71 AGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCT > 1:3558260/1‑71 AGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCT < 1:1159627/71‑1 AGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA < 1:4910052/59‑1 ATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA > 1:3488544/1‑53 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:7686979/1‑70 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAC > 1:1009293/1‑58 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:6275675/1‑55 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGAAAAACCTAAACCTTCCATCT > 1:5542857/1‑67 || TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > AP009048/3932928‑3932996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |