| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 314684 = | NA (NA) | 7 (0.090) | 3/90 | NT | NA | coding (179/309 nt) | insE | IS3 element protein |
| ? | AP009048 | 314716 = | NA (NA) | coding (211/309 nt) | insE | IS3 element protein | |||||
Only 100 of 136 total aligned reads displayed.
ATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/314757‑314684‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtctACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCG > AP009048/314716‑314785 ATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG > 1:4319520/1‑71ATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG > 1:2214965/1‑71 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:3778601/71‑1 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:1280027/71‑1 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:5120173/71‑1 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:6076835/71‑1 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:6035731/71‑1 TCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG > 1:2571554/1‑70 CCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:2799307/1‑70 CCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG > 1:3251087/1‑69 CCGTTCTGCCAGGTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:5402092/1‑71 CCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:977090/1‑71 CCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:7914498/1‑71 CCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:1164441/1‑71 CGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:2118113/1‑70 CGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:4556691/1‑70 CGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:331393/1‑70 CCAGCTGGCGTTTGAGACGTGCAATCTAGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:7546974/1‑61 AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:5536968/60‑1 AGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:6191503/60‑1 GCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG < 1:1601163/57‑1 GCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG < 1:4612121/57‑1 GCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG < 1:7499925/57‑1 GCGTTTGAGACGTGCAATCGCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:1814998/55‑1 GTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:4906066/53‑1 GTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:4797345/53‑1 TTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT < 1:279428/53‑1 TTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTC < 1:6121645/52‑1 TTTAAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT < 1:4831895/53‑1 TTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCGGAAGACGT > 1:2202542/1‑50 TTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:2906446/1‑50 TTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACG > 1:4823066/1‑49 TGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:7139871/1‑49 AGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:2989443/1‑49 ACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:7761894/1‑45 ACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:442757/1‑45 GCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:951784/1‑41 GCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:6038660/1‑41 CAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:4055148/1‑42 CAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:5716638/1‑42 CAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:6883087/40‑1 CAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT < 1:4745064/40‑1 CAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:6103081/1‑40 TCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:4558101/1‑39 TCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT > 1:2318358/1‑39 TCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:5084564/1‑37 TCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:7379305/1‑37 TCGGTAGACATCTCCAGTTCACGTTCAGGAGACGT > 1:5874298/1‑35 TCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:184305/1‑35 TCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:3658861/1‑35 TCGGTAGACATCTCCAGTTCACGTTCAGAAGACGT > 1:1038290/1‑35 CTCCAGTTCACGTTCAGAAGACGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATG > 1:1092926/1‑69 CCAGTTCACGTTCAGAAGACGTCTACCGAGATTGCA > 1:3591641/1‑36 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG > 1:256921/1‑71 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG > 1:2412137/1‑71 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG > 1:2181921/1‑71 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG > 1:4447983/1‑71 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAA < 1:6861268/69‑1 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT > 1:6128322/1‑54 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATG < 1:5125653/47‑1 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATG < 1:5271592/47‑1 GTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACG < 1:1576675/42‑1 GTCTACCGAGATTGCAAGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAA > 1:5556215/1‑68 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGC < 1:2319950/71‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGC < 1:1486863/71‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGC < 1:4854058/71‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG < 1:4514162/70‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG < 1:6953716/70‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAA < 1:744335/67‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCA < 1:4173765/65‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG < 1:6633042/55‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGC < 1:4668892/52‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGC < 1:3755287/52‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGAT < 1:4000083/45‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGAT < 1:3384623/45‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAA < 1:5795494/39‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAA < 1:1246341/39‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAA < 1:5605386/39‑1 TCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAA < 1:7402997/39‑1 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCC > 1:762752/1‑71 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCC > 1:6683602/1‑71 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCC > 1:7291454/1‑71 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGG > 1:4845904/1‑69 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAA > 1:1890095/1‑65 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTA < 1:7646676/57‑1 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGG > 1:1976393/1‑54 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAA > 1:2846570/1‑47 CTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGG > 1:3754621/1‑42 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCG > 1:6728141/1‑71 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCG > 1:2536104/1‑71 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAG > 1:7744499/1‑67 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT < 1:691631/51‑1 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT < 1:5726958/51‑1 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCT < 1:858405/51‑1 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGG > 1:7770762/1‑41 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACG > 1:1260581/1‑39 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACG > 1:881212/1‑39 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAAC > 1:4152463/1‑38 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAAC > 1:3621996/1‑38 TACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAAC > 1:7242790/1‑38 ATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAGAAGACGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/314757‑314684‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtctACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCG > AP009048/314716‑314785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |