New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AP009048 | 315417 = | NA (NA) | 4 (0.060) | 4/80 | NT | NA | coding (607/867 nt) | insF | IS3 element protein InsF |
? | AP009048 | 315454 = | NA (NA) | coding (644/867 nt) | insF | IS3 element protein InsF |
Only 100 of 300 total aligned reads displayed.
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/315495‑315417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA > AP009048/315454‑315523 AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:3328349/1‑71 AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:3675276/1‑71 AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA < 1:1911083/71‑1 GGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGAT < 1:7774645/71‑1 GGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:6413077/1‑70 GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:7369936/71‑1 CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA > 1:3987837/1‑71 CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA > 1:1512499/1‑71 ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT < 1:929408/71‑1 ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:463604/1‑71 ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:7218768/1‑71 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:6859544/1‑71 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:5924076/71‑1 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:6066088/71‑1 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:6506568/1‑71 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:6832780/1‑71 TATTGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA > 1:4943324/1‑68 TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:2153462/1‑71 TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:2442560/1‑71 TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:7904538/1‑71 ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:6191441/1‑71 ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:3132883/1‑71 ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT < 1:4028873/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTTATAATCTG < 1:7663065/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC < 1:7154021/71‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC > 1:6368558/1‑71 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC < 1:5863242/71‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC > 1:5640613/1‑71 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:4485058/70‑1 GCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA > 1:6650522/1‑57 GCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:4547066/1‑55 CCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:1310819/1‑55 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGCTAATCT < 1:16936/55‑1 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:1048613/1‑56 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT < 1:2912100/53‑1 TTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:6017604/50‑1 TTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:7609175/50‑1 TTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:6924804/1‑51 TTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:7510873/1‑51 GCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:2079032/45‑1 CTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:5835792/44‑1 TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:6798964/46‑1 TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:7178639/1‑45 TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA < 1:3963800/44‑1 ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:5699459/1‑45 ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:3746007/1‑43 ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:6950040/1‑39 ACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:4171554/42‑1 CTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:2573848/1‑42 TTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:5197237/1‑42 CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:4819737/1‑40 CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:1851907/1‑39 CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:3018568/1‑37 GATTATGCCGCTTCAGTTGCGCCTGATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGC > 1:1710969/1‑63 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:1478030/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:2354457/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:5528662/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:5367647/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:2285326/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCC > 1:5472841/1‑50 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT > 1:6291648/1‑71 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT < 1:318524/71‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:7406224/70‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGT > 1:4260516/1‑54 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:675145/1‑71 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:1796879/1‑71 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTC > 1:1597920/1‑67 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAA < 1:4437461/57‑1 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATA > 1:4204451/1‑43 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTAC > 1:1554930/1‑39 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG < 1:7012307/71‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG > 1:2724950/1‑71 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG < 1:4665387/71‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG < 1:3419395/71‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:1383719/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:89742/1‑70 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:20127/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:3097714/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:3589930/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTAC > 1:2875490/1‑38 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG < 1:7867393/70‑1 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAG > 1:1030628/1‑57 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT > 1:3228579/1‑47 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGC > 1:5296457/1‑45 CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT > 1:1410595/1‑46 CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT > 1:2746203/1‑46 CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT > 1:2961002/1‑46 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCT > 1:6214016/1‑70 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCT > 1:4315674/1‑70 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTT < 1:483816/58‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC < 1:5770689/56‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC < 1:1171331/56‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT > 1:73534/1‑45 GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTG > 1:3479642/1‑70 GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAG > 1:4766134/1‑54 GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG < 1:781344/47‑1 GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG < 1:2594253/47‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTTGAAAGCTTCTTTCATTCGCTGA > 1:5674110/1‑70 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA < 1:6314709/70‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGC < 1:528919/67‑1 AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/315495‑315417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA > AP009048/315454‑315523 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |