New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 315417 =NA (NA)4 (0.060) 4/80 NT NA coding (607/867 nt) insF IS3 element protein InsF
?AP009048 315454 = NA (NA)coding (644/867 nt) insF IS3 element protein InsF

Only 100 of 300 total aligned reads displayed.

AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315495‑315417
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA  >  AP009048/315454‑315523
                                                                                                                                                     
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                >  1:3328349/1‑71
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                >  1:3675276/1‑71
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                <  1:1911083/71‑1
 GGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGAT                                                                               <  1:7774645/71‑1
 GGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                >  1:6413077/1‑70
  GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              <  1:7369936/71‑1
   CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA                                                                             >  1:3987837/1‑71
   CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA                                                                             >  1:1512499/1‑71
    ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            <  1:929408/71‑1
    ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:463604/1‑71
    ATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:7218768/1‑71
     TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           >  1:6859544/1‑71
     TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           <  1:5924076/71‑1
     TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           <  1:6066088/71‑1
     TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           >  1:6506568/1‑71
     TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           >  1:6832780/1‑71
      TATTGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA                                                                             >  1:4943324/1‑68
      TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:2153462/1‑71
      TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:2442560/1‑71
      TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:7904538/1‑71
       ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         >  1:6191441/1‑71
       ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         >  1:3132883/1‑71
       ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          <  1:4028873/70‑1
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTTATAATCTG                                                                         <  1:7663065/70‑1
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC                                                                        <  1:7154021/71‑1
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC                                                                        >  1:6368558/1‑71
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC                                                                        <  1:5863242/71‑1
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC                                                                        >  1:5640613/1‑71
        TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         <  1:4485058/70‑1
                GCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              >  1:6650522/1‑57
                GCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                >  1:4547066/1‑55
                    CCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:1310819/1‑55
                      TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGCTAATCT                                                                          <  1:16936/55‑1
                      TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         >  1:1048613/1‑56
                      TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            <  1:2912100/53‑1
                       TTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              <  1:6017604/50‑1
                       TTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              <  1:7609175/50‑1
                        TTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:6924804/1‑51
                        TTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:7510873/1‑51
                            GCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              <  1:2079032/45‑1
                             CTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA                                                                              <  1:5835792/44‑1
                              TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           <  1:6798964/46‑1
                              TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:7178639/1‑45
                              TCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA                                                                             <  1:3963800/44‑1
                                ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:5699459/1‑45
                                ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:3746007/1‑43
                                ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA                                                                                >  1:6950040/1‑39
                                  ACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC                                                                           <  1:4171554/42‑1
                                   CTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:2573848/1‑42
                                    TTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         >  1:5197237/1‑42
                                      CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG                                                                         >  1:4819737/1‑40
                                      CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT                                                                          >  1:1851907/1‑39
                                      CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT                                                                            >  1:3018568/1‑37
                                             GATTATGCCGCTTCAGTTGCGCCTGATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGC                                           >  1:1710969/1‑63
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:1478030/71‑1
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:2354457/71‑1
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:5528662/71‑1
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:5367647/71‑1
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:2285326/71‑1
                                                                      ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCC                               >  1:5472841/1‑50
                                                                       TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT         >  1:6291648/1‑71
                                                                       TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT         <  1:318524/71‑1
                                                                       TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT          <  1:7406224/70‑1
                                                                       TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGT                          >  1:4260516/1‑54
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        >  1:675145/1‑71
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        >  1:1796879/1‑71
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTC            >  1:1597920/1‑67
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAA                      <  1:4437461/57‑1
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATA                                    >  1:4204451/1‑43
                                                                        AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTAC                                        >  1:1554930/1‑39
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG       <  1:7012307/71‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG       >  1:2724950/1‑71
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG       <  1:4665387/71‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG       <  1:3419395/71‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        <  1:1383719/70‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        >  1:89742/1‑70
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        <  1:20127/70‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        <  1:3097714/70‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC        <  1:3589930/70‑1
                                                                         ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTAC                                        >  1:2875490/1‑38
                                                                          TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG       <  1:7867393/70‑1
                                                                          TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAG                    >  1:1030628/1‑57
                                                                          TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT                              >  1:3228579/1‑47
                                                                          TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGC                                >  1:5296457/1‑45
                                                                           CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT                              >  1:1410595/1‑46
                                                                           CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT                              >  1:2746203/1‑46
                                                                           CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT                              >  1:2961002/1‑46
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCT     >  1:6214016/1‑70
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCT     >  1:4315674/1‑70
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTT                 <  1:483816/58‑1
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC                   <  1:5770689/56‑1
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC                   <  1:1171331/56‑1
                                                                            TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCT                              >  1:73534/1‑45
                                                                             GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTG    >  1:3479642/1‑70
                                                                             GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAG                    >  1:4766134/1‑54
                                                                             GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG                           <  1:781344/47‑1
                                                                             GCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG                           <  1:2594253/47‑1
                                                                              CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTTGAAAGCTTCTTTCATTCGCTGA   >  1:5674110/1‑70
                                                                              CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA   <  1:6314709/70‑1
                                                                              CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGC      <  1:528919/67‑1
                                                                                                                                                     
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315495‑315417
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA  >  AP009048/315454‑315523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.