New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 315465 =NA (NA)8 (0.100) 6/92 NT NA coding (655/867 nt) insF IS3 element protein InsF
?AP009048 315484 = NA (NA)coding (674/867 nt) insF IS3 element protein InsF

Only 100 of 125 total aligned reads displayed.

GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315537‑315465
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTAT  >  AP009048/315484‑315553
                                                                                                                                               
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:6592981/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:466808/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:4181824/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:339130/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:2558803/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:1807474/1‑71
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:2369606/1‑71
 GATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         >  1:6305951/1‑71
 GATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:2376828/71‑1
 GATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:5910499/1‑70
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:5004232/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:6376960/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:4567077/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:2827069/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:2387815/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:2011013/71‑1
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:1287207/71‑1
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:1397714/71‑1
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        >  1:6070262/1‑71
  ATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAACAACCTTTTGCGCT                                                                        >  1:4784385/1‑71
    ACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         >  1:7456547/1‑68
       TTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          <  1:6764832/64‑1
       TTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          <  1:2492462/64‑1
       TTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          <  1:1958687/64‑1
          CACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:1835476/63‑1
          CACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:3046063/1‑61
          CACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCG                                                                          >  1:7214014/1‑61
           ACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:7257214/61‑1
                       TGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:4569492/50‑1
                       TGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:6597648/50‑1
                       TGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:5191506/50‑1
                       TGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAAACTTTTGCGCT                                                                        <  1:2873418/50‑1
                          AAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:4427514/47‑1
                          AAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:3182779/47‑1
                          AAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:3967082/47‑1
                          AAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT                                                                        <  1:3357000/47‑1
                                   TCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:7016880/37‑1
                                   TCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:7224531/37‑1
                                   TCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:7004365/37‑1
                                    CCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGC                                                                         <  1:6819011/36‑1
                                                 ATCGTAGCAGCAACCTTTTGCGCTACGATAATGCCTGCG                                                         >  1:1830947/1‑39
                                                   CGTAGCAGCAACCTTTTGCGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:5160199/68‑1
                                                   CGTAGCAGCAACCTTTTGCGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:4688277/68‑1
                                                     TAGCAGCAACCTTTTGCGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA                                <  1:3755936/60‑1
                                                       GCAGCAACCTTTTGCGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATC                   >  1:5037156/1‑71
                                                         AGCAACCTTTTGCGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAA                               >  1:6705301/1‑57
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     >  1:5573838/1‑70
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     >  1:2357004/1‑70
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     >  1:2056004/1‑70
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGA             <  1:3455580/62‑1
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGA             <  1:56646/62‑1
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCC                  >  1:6798797/1‑57
                                                                      GCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCC                  >  1:5784557/1‑57
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTA   >  1:6181174/1‑71
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTA   >  1:321387/1‑71
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTA   >  1:1580472/1‑71
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTA   >  1:1067007/1‑71
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:4969216/70‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:3108219/70‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:6900454/70‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:2980298/70‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:720152/70‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:881908/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:7456518/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:7536128/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:6021206/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:2043240/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:1370433/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:1283973/69‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGA           <  1:7702854/63‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGA           <  1:1251374/63‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGA           <  1:790442/63‑1
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCA                 >  1:7584690/1‑57
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCA                 >  1:1423515/1‑57
                                                                       CTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAA                         >  1:1146970/1‑49
                                                                       CTACGAAAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACTCTTTA   >  1:1012817/1‑71
                                                                        TACGATAATGCCTGCGTTGAAAGCTTCTTTCATTCGCTGAAAGTGG                           <  1:5383247/46‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTAT  >  1:633740/1‑71
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTAT  >  1:349636/1‑71
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTAT  >  1:7674981/1‑71
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTA   >  1:3785096/1‑70
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:7678896/69‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTT    <  1:5595599/69‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:5932110/68‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTT     <  1:4359483/68‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACT      >  1:308032/1‑67
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACT      >  1:1362782/1‑67
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGA             >  1:823117/1‑60
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGA             >  1:6037925/1‑60
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:7787429/47‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:5856468/47‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:1154242/47‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGA                          <  1:4935523/47‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGG                           <  1:1900688/46‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTG                            <  1:4766359/45‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTG                            <  1:837993/45‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA                                 <  1:3479759/40‑1
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGC                                    >  1:6881131/1‑37
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGC                                    >  1:3311894/1‑37
                                                                        TACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC                                      >  1:5400236/1‑35
                                                                                                                                               
GGATACATTCCACTTTCAGCGAATGAAAGAAGCTTTCCACGCAGGCATTATCGTAGCAGCAACCTTTTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315537‑315465
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTAT  >  AP009048/315484‑315553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.