New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 54608471 (0.870)5 (0.070) 3/84 NT 7.4% coding (181/1668 nt) fdrA predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain
?AP009048 = 546096 64 (0.920)coding (193/1668 nt) fdrA predicted acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain

AATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/546008‑546084
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacgcAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGCTTTA  <  AP009048/546096‑546029
                                                                                                                                                 
AATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACG                                                                            >  1:7824831/1‑71
   GATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCA                                                                         >  1:4801531/1‑71
    ATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCAC                                                                        <  1:5187025/71‑1
    ATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCAC                                                                        <  1:49978/71‑1
      GGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGC                                                                      >  1:1685325/1‑71
                GCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCA                                                                         >  1:1965140/1‑58
                       AAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCAAATATCGTTTGGCGTG                                                     <  1:5734/71‑1
                            TTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGC                                                                           <  1:6244815/44‑1
                              ATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCAAATATCGTTCGGCGTGG                                                    >  1:1187446/1‑65
                                     ACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCAAATATCGTTCGGCGTGG                                                    <  1:2803328/58‑1
                                     ACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCAAATATCGTTCGGCGTGG                                                    <  1:2087292/58‑1
                                     ACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGCAAATATCGTTCGGCGTGG                                                    <  1:7555018/58‑1
                                                                      GCCACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGC      >  1:1959132/1‑71
                                                                       CCACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGCT     >  1:3862082/1‑71
                                                                       CCACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTG                    <  1:5576948/56‑1
                                                                       CCACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTG                      <  1:6074838/54‑1
                                                                       CCACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAAC                         <  1:6314711/51‑1
                                                                        CACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAA            <  1:715449/63‑1
                                                                         ACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGCTT    >  1:7347165/1‑70
                                                                         ACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCAT                                  <  1:5805780/40‑1
                                                                         ACGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCAT                                  <  1:7887620/40‑1
                                                                          CGCAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGCTTTA  >  1:6543574/1‑71
                                                                                                                                                 
AATGATGGGTACGCCCGCCAATAAAGCGTTATTAGATACCACAGGTTTCTGGCATGACGATTTTAATAACGCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/546008‑546084
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacgcAAATATCGTTCGGCGTGGCGTTATTAAAATCGTCATGCCAGAAACCTGTGGTATCTAATAACGCTTTA  <  AP009048/546096‑546029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.