| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 567451 = | 126 (1.550) | 11 (0.150) | 7/88 | NT | 9.9% | coding (167/186 nt) | renD | hypothetical protein |
| ? | AP009048 | 567473 = | 86 (1.180) | intergenic (+3/‑65) | renD/emrE | hypothetical protein/multidrug resistance protein | |||||
CTGTTCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/567524‑567451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAT > AP009048/567473‑567539 CTGTTCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATT > 1:5014431/1‑70 GTTCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATTGAT > 1:2947024/1‑71 TTCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATTGAT > 1:6249021/1‑70 TCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATT > 1:4884315/1‑66 TCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATT > 1:3027900/1‑66 TCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATT > 1:2072842/1‑66 GAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCAATGGGAACACAATGATGAAACAGGT < 1:2335066/70‑1 GTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATTGAT > 1:1318868/1‑52 CAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATT > 1:4639920/1‑43 GTTTCATCATTGTGTTCCCATTGATGTAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTC < 1:1785370/64‑1 ATCATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAG > 1:6225384/1‑49 ATCATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAG > 1:1604554/1‑49 ATCATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAG > 1:7605647/1‑49 TCATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAA > 1:3754334/1‑69 CATTGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTA > 1:7858439/1‑46 TGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAG < 1:2607128/59‑1 TGTGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAG < 1:3384709/59‑1 TGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGA > 1:391514/1‑68 TGTTCCCATTGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTT > 1:1268907/1‑59 TGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTA < 1:909543/71‑1 TGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTA > 1:2266859/1‑71 TGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTC < 1:6235649/43‑1 GATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAT > 1:5929232/1‑71 ATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTC > 1:5527319/1‑43 ATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTC > 1:872704/1‑43 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGC < 1:2677019/65‑1 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGC < 1:1153930/65‑1 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAA > 1:423622/1‑50 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAA > 1:330080/1‑50 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAA > 1:1144454/1‑50 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTG > 1:5505278/1‑48 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTT > 1:2592265/1‑47 GAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTT > 1:1083250/1‑47 CTGTTCAAACTGGAGAGAATTGTACTACAGTTTGAACTCAACTCACCTGTTTCATCATTGTGTTCCCATTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/567524‑567451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAT > AP009048/567473‑567539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |