| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 630089 = | 84 (1.030) | 5 (0.100) +AGCGCCTTTCCACAGCGGG |
4/60 | NT | 7.5% | coding (973/2106 nt) | cstA | carbon starvation protein |
| ? | AP009048 | = 4595021 | 118 (1.450) | coding (939/2151 nt) | yjiY | predicted inner membrane protein | |||||
CAGGCGATGGTGATAAACAGGAACGGGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/630120‑630089‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTACATTGACGGTACTGG < AP009048/4595021‑4595001 ||||||||||||||||||| CAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACATTGACGGTACTG > 1:2818344/1‑71CAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACATTGACGGTACTG < 1:6980173/71‑1 AGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACATTGACGGTACTGG > 1:2153109/1‑71 GGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACATTGACGGTACT < 1:4049958/62‑1 ACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAG < 1:2400600/39‑1 ACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAG < 1:2617598/39‑1 CAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTA > 1:5404701/1‑40 CAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCC > 1:2055607/1‑36 CAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCC > 1:3997353/1‑36 CAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCC > 1:6726508/1‑36 ||||||||||||||||||| CAGGCGATGGTGATAAACAGGAACGGGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/630120‑630089‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTACATTGACGGTACTGG < AP009048/4595021‑4595001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |