| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 635883 | 66 (0.810) | 6 (0.080) | 3/94 | NT | 7.8% | intergenic (‑91/+56) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | = 635900 | 78 (1.000) | intergenic (‑108/+39) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/635813‑635883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAGTGTTTACTTTATAATTAACAGACTTAT < AP009048/635900‑635832 TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT > 1:3357919/1‑71TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT < 1:7348468/71‑1 GGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAAAACTGTAAAGCAGAGTGTTTTATTTTT < 1:1014565/65‑1 ATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTT > 1:6036978/1‑60 AGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCGAATGAAAAA < 1:1877362/71‑1 AGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCGAATGAAAAA < 1:686456/71‑1 AACACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCGAATGAA < 1:2936270/48‑1 CACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCG > 1:4595322/1‑40 CACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCG > 1:4745102/1‑40 CACTGTAAAGCAGAGTGTTTTATTTTTTATTCACAGCGCG > 1:566621/1‑40 TTTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAGTGTTTACTTTATAATTAACAGACTTAT < 1:2886198/71‑1 TTTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAGTGTTTACTTTATAATTAACAGAC < 1:6157479/67‑1 TTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTT > 1:894911/1‑38 TTACAGGGTGATCAGTGAGATAAGTCTGTTAATTATAAAGTAAACACTGTAAAGCAGAGTGTTTTATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/635813‑635883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAGTGTTTACTTTATAATTAACAGACTTAT < AP009048/635900‑635832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |