| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 752914 | 142 (1.740) | 8 (0.110) | 3/90 | NT | 5.8% | coding (304/567 nt) | ybgD | predicted fimbrial‑like adhesin protein |
| ? | AP009048 | = 752933 | 129 (1.730) | coding (285/567 nt) | ybgD | predicted fimbrial‑like adhesin protein | |||||
CGACCCCAGTTGCTTCGCCTGCACTGGTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/752842‑752914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTTGAGCAACACCAG < AP009048/752933‑752865 CGACCCCAGTTGCTTCGCCTGCACTGGTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTA > 1:6815844/1‑71 GACCCCAGTTGCTTCGCCTGCACTTGTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTAT < 1:1733895/71‑1 GACCCCAGTTGCTTCGCCTGCACTGGTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTAT > 1:415035/1‑71 GTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCGATA < 1:1070528/70‑1 TCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCT < 1:2943029/37‑1 CGTAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCG < 1:1274442/50‑1 CGTAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCG < 1:6609671/50‑1 CGTAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCG < 1:4673843/50‑1 CGTAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACATTCG < 1:817083/50‑1 TAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCGAT > 1:6049087/1‑50 TAGCACCAGTTGTCTTAGCCGTGCTATCCAAAGTTGGCGTAACCTTCGAT > 1:1942146/1‑50 TAGCACCAGTTGTCTTAGCCGTGATATCCAAAGTTGGCGTAACCTTCGAT > 1:6340718/1‑50 aaCCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTT < 1:4227210/58‑1 ATCCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTT < 1:5343806/60‑1 TCCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTTGAGCAACACCAG > 1:3804327/1‑71 TCCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTTGAGCAACACCA < 1:6295962/70‑1 TCCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTG < 1:723863/57‑1 CCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTTGA > 1:3295184/1‑60 CGACCCCAGTTGCTTCGCCTGCACTGGTGTTGCTCAACAAAGGCGTAGCACCAGTTGTCTTAGCCGTGCTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/752842‑752914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcCAAAGTTGGCGTAACCTTCGATAGCACGGCTAAGACAACTGGTGCTACGCCTTTGTTGAGCAACACCAG < AP009048/752933‑752865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |