New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 926400	NA (NA)	7 (0.090)	3/98	NT	10.1%	intergenic (‑7/+247)	serW/infA	tRNA‑Ser/translation initiation factor IF‑1
	?	AP009048	= 1097921	62 (0.760)					intergenic (‑28/‑206)	serX/ycdW	tRNA‑Ser/2‑ketoacid reductase

CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/926332‑926400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTTCCAGCAAGACAGGAAC  <  AP009048/1097921‑1097902                                                                                           CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCG                    >  1:4247989/1‑71  CGATACGTTGCCGTATACACACTTTCCAGTCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGT                   <  1:6818326/71‑1  CGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGT                   >  1:2940105/1‑71   GATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTT                  >  1:5894327/1‑71   GATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTT                  <  1:7056158/71‑1      ACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCC                <  1:5073584/70‑1                    ACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC                     <  1:2530557/51‑1                    ACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC                     <  1:3405422/51‑1                    ACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC                     <  1:6401794/51‑1                    ACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC                     <  1:7541205/51‑1                            CAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGA    <  1:847948/60‑1                              GGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGAAC  >  1:3326006/1‑60                              GGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGAAC  >  1:4099249/1‑60                              GGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGAAC  >  1:6192023/1‑60                                                   GGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGAA   >  1:3577331/1‑38                                                   GGACACCTCACCAAATTGTCGTTCCAGCAAGACAGGAA   >  1:4334474/1‑38                                                                                           CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/926332‑926400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTTCCAGCAAGACAGGAAC  <  AP009048/1097921‑1097902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.