| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 956252 | 88 (1.080) | 8 (0.110) | 5/88 | NT | 9.2% | coding (803/1761 nt) | ycaO | conserved hypothetical protein |
| ? | AP009048 | = 956270 | 78 (1.070) | coding (785/1761 nt) | ycaO | conserved hypothetical protein | |||||
CCAGTGCTACGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/956202‑956252‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAGCACTGGA < AP009048/956270‑956201 CCAGTGCTACGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACGG > 1:3340447/1‑70 ACGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTA < 1:308509/42‑1 CGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACGGTACCTGCTTT < 1:6815331/71‑1 CGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTA < 1:2915166/41‑1 CCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACG < 1:289539/58‑1 CCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACG < 1:3722658/58‑1 AAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACGGT > 1:2212062/1‑58 AAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACGGT > 1:6384202/1‑58 AAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTACTGTTCAATCCTGCTAACGGT > 1:6728829/1‑58 AAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTA > 1:6359533/1‑36 AGGCAAAGCAGGTACTGTTCAATCCTGCTAACGGTACCTG < 1:5802864/40‑1 GGTACTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGC > 1:6406857/1‑64 GTACTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAG > 1:3062621/1‑67 CTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAGCACTGG < 1:6866056/70‑1 CTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAGCACTGG < 1:2090335/70‑1 CTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAGCACTGG < 1:3661419/70‑1 CTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGCAGCACTGGA < 1:2405729/71‑1 CCAGTGCTACGCCAAAATCAGGATGCGCACCGAAAGAGGCAAAGCAGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/956202‑956252‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacTGTTCAATCCTGCTAACGGTACCTGCTTTGCCTCTTTCGGTGCGCATCCTGATTTTGGCGTAGCACTGGA < AP009048/956270‑956201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |