| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 971038 = | 51 (0.630) | 7 (0.100) | 4/82 | NT | 15.6% | coding (1228/1233 nt) | ycaQ | conserved hypothetical protein |
| ? | AP009048 | 971066 = | 33 (0.480) | intergenic (+23/‑29) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein | |||||
AAGCAGACGATGATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/971112‑971038‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttatgcATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTT > AP009048/971066‑971133 AAGCAGACGATGATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATT < 1:6114307/70‑1 TGATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTA > 1:4695166/1‑62 CCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATT < 1:2613487/56‑1 ATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTA > 1:1871957/1‑56 TAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTT < 1:7753201/54‑1 GCATAAATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:2646792/1‑69 CATAAATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTG > 1:1187675/1‑71 CATAAATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTC > 1:998588/1‑69 AATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTG < 1:6541338/71‑1 AATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTG < 1:2336016/71‑1 AATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTG < 1:3522829/71‑1 AATCTTATCATAATCATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTT < 1:5916423/70‑1 ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCA > 1:7154284/1‑62 ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCA > 1:557150/1‑62 ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTAT < 1:7198083/39‑1 TTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTG > 1:5516594/1‑51 TTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCG > 1:6923075/1‑71 TTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTG > 1:3635162/1‑63 TTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATC < 1:6207486/45‑1 TTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATC < 1:6950931/45‑1 TATGCATTCATAACCCGATCCATCTGGAGGAACTATGG < 1:633846/38‑1 TATGCATTCATAACCCGATCCATCTGGAGGAACTATGG < 1:6305577/38‑1 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:6365267/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:6791555/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:5622549/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:6289848/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:5861387/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:4524228/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:229443/1‑45 ATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGT > 1:2210222/1‑45 TGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTTCCTGCCCGGTT < 1:1184245/71‑1 TGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGT < 1:5779109/70‑1 TGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGT < 1:5544828/70‑1 GCATTCTTAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGC > 1:1019599/1‑60 GCATTCATAACCCGATCCATCTGGAGGAACTATGG > 1:6801883/1‑35 GCATTCATAACCCGATCCATCTGGAGGAACTATGG > 1:4203716/1‑35 CATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGT < 1:4656011/68‑1 AAGCAGACGATGATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/971112‑971038‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttatgcATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTT > AP009048/971066‑971133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |