| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1018919 | 67 (0.820) | 4 (0.050) | 4/90 | NT | 6.4% | coding (13/453 nt) | ycbG | conserved hypothetical protein |
| ? | AP009048 | = 1018940 | 55 (0.740) | coding (34/453 nt) | ycbG | conserved hypothetical protein | |||||
CTTCACTGGCCTAAAAAGCTGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1018847‑1018919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCGCTTTCAAGATTTTCAAGTTGTTGATATTTCATAGCGATCTCAATGTTACCGTGTAACTCTTTACAG < AP009048/1018940‑1018873 CTTCACTGGCCTAAAAAGCTGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATC > 1:7442931/1‑70 TCACTGGCCTAAAAAGCTGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATCAA > 1:238051/1‑70 AAAAAGCTGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATCA > 1:3889096/1‑59 TGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATC > 1:4574798/1‑51 TATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATCAACCGCTTTCAAGATTTTCAAGT > 1:1899578/1‑71 CACGGTAACATTGAGATCGCTATGAAATATCAACCGCTTTCAAGATTTTCAAGTTGTTG < 1:1358955/59‑1 ATTGAGATCGCTATGAAATATCAACCGCTTTCAAGATTTTCAAGTTGTTGA < 1:1660686/51‑1 TGAGATCGCTATGAAATATCAACCGCTTTCAAGATTTTCAAGTTGTTGATA > 1:4225627/1‑51 CAACCGCTTTCAAGATTTTCAAGTTGTTGATATTTCATAGCGATCTCAATGTTACCGTGTAACTCTTTACA < 1:7032334/71‑1 AACCGCTTTCAAGATTTTCAAGTTGTTGATATTTCATAGCGATCTCAATGTTACCGT < 1:6673063/57‑1 ACCGCTTTCAAGATTTTCAAGTTGTTGATATTTCATAGCGATCTCAATGTTACCGTGTAACTCTTTACAG > 1:365322/1‑70 CTTCACTGGCCTAAAAAGCTGATATTCTGTAAAGAGTTACACGGTAACATTGAGATCGCTATGAAATATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1018847‑1018919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCGCTTTCAAGATTTTCAAGTTGTTGATATTTCATAGCGATCTCAATGTTACCGTGTAACTCTTTACAG < AP009048/1018940‑1018873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |