| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1243092 = | 116 (1.420) | 10 (0.140) | 4/84 | NT | 9.9% | coding (557/1737 nt) | cvrA | predicted cation/proton antiporter |
| ? | AP009048 | 1243124 = | 82 (1.170) | coding (525/1737 nt) | cvrA | predicted cation/proton antiporter | |||||
ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1243167‑1243092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggatCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTACTGCCGGATTCAATTTCCAGCGTC > AP009048/1243124‑1243193 ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGC < 1:2204075/71‑1ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGC < 1:5260462/71‑1ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:1656587/70‑1ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:1674070/70‑1ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:5774634/70‑1 ATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGG < 1:7416745/71‑1 ATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGG < 1:7021979/71‑1 ATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGG < 1:4670065/71‑1 TCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:5269245/55‑1 TCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:4335300/55‑1 TCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAG < 1:4326263/55‑1 TTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCT > 1:4700375/1‑55 TGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGG > 1:5845810/1‑53 TGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGG > 1:2449153/1‑53 ACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGGAT > 1:97179/1‑53 ACGATTACCCTAATTGAGATGATCCAGCATCATGAGAGCAATATTAGCTGGAT > 1:1057155/1‑53 TTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGC > 1:446192/1‑44 TTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGC > 1:6271499/1‑44 GCATCATGAGAGCAATATTAGCTGGATCATCGCAATTAGGGTAATCGTCAGAAA < 1:3195623/54‑1 GCATCATGAGAGCAATATTAGCTGGATCATCGCAATTAGGGTAATCGTCAGAAA < 1:6777540/54‑1 TCATGAGAGCATTATTAGCTGGATCATCGCAATTAG < 1:7292519/36‑1 TCATGAGAGCAATATTAGCTGGATCATCGCAATTAG < 1:1864569/36‑1 TCATGAGAGCAATATTAGCTGGATCATCGCAATTAG < 1:6037869/36‑1 TCATGAGAGCAATATTAGCTGGATCATCGCAATTAG < 1:3373877/36‑1 CATGAGATCAATATTAGCTGTATCATCGCAATTAGGGTAATCGTCAGAAA < 1:7002152/50‑1 ATGAGAGCAATATTAGCTGGATCATCGCAATTAGGG > 1:239532/1‑36 ATGAGAGCAATATTAGCTGGATCATCGCAATTAGGG > 1:1131884/1‑36 AATATTAGCTGGATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTACTGCCGGATTC < 1:1287947/71‑1 ATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTACTGCCGGATTCAATTTCCAGCGT < 1:1994153/71‑1 ATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTAC > 1:6526961/1‑49 ATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTAC > 1:2824950/1‑49 ATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTA > 1:2750351/1‑48 ATCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCAT > 1:1925879/1‑38 TCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTACTGCCGGATTCAATTTCCAGCGTC < 1:4158628/71‑1 ATGATCCAATGGCGGTCTTTCTGACGATTACCCTAATTGCGATGATCCAGCATCATGAGAGCAATATTAGCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1243167‑1243092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggatCATCGCAATTAGGGTAATCGTCAGAAAGACCGCCATTGGATCATTACTGCCGGATTCAATTTCCAGCGTC > AP009048/1243124‑1243193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |