| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1509287 | 66 (0.810) | 4 (0.050) | 3/90 | NT | 5.6% | coding (793/1962 nt) | ydcP | predicted peptidase |
| ? | AP009048 | = 1509300 | 73 (0.980) | coding (806/1962 nt) | ydcP | predicted peptidase | |||||
GATTGAAGGGCGTTACAAAGATATGAGCTACGTGAAGAATATCACCGCCCATTATCGCCAGATGCTTGATGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1509214‑1509287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaCGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCTT < AP009048/1509300‑1509231 GATTGAAGGGCGTTACAAAGATATGAGCTACGTGAAGAATATCACCGCCCATTATCGCCAGATGCTTGATG > 1:4900756/1‑71 GAAGGGCGTTACAAAGATATGAGCTACGTGAAGAATATCACCGCCCATTATCGCCAGATGCTTGATGCCA < 1:6468406/70‑1 GAATATCACCGCCCATTATCGCCAGATGCTTGATGCCA > 1:1649985/1‑38 CACCGCCCATTATCGCCAGATGCTTGATGCCACGTTCTTCAATAATGGC < 1:4391081/49‑1 CCGCCCATTATCGCCAGATGCTTGATGCCACGTTCTTCAATAATGGCAT > 1:4739256/1‑49 CCGCCCATTATCGCCAGATGCTTGATGCCACGTTCTTCAATAATGGCAT > 1:5614952/1‑49 CGCCCATTATCGCCAGATGCTTGATGCCACGTTCTTCAATAATGGCAT > 1:3298259/1‑48 aGCCACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCAC > 1:6992907/2‑61 CACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCT < 1:2983741/71‑1 CACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCT < 1:5653417/71‑1 CACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATT < 1:2853631/52‑1 CACGCTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATT < 1:1303921/52‑1 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCTT > 1:4099741/1‑71 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCTT > 1:7026734/1‑71 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCTT > 1:1146141/1‑71 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCT < 1:3795698/70‑1 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCT > 1:2864185/1‑70 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTT > 1:2985734/1‑54 ACGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTT > 1:7420317/1‑54 GATTGAAGGGCGTTACAAAGATATGAGCTACGTGAAGAATATCACCGCCCATTATCGCCAGATGCTTGATGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1509214‑1509287‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaCGTTCTTCAATAATGGCATCAAGCATCTGGCGATAATGGGCGGTGATATTCTTCACGTAGCTCATATCTT < AP009048/1509300‑1509231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |