| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1523049 | 102 (1.250) | 13 (0.170) | 5/92 | NT | 12.5% | coding (1731/2103 nt) | yncD | predicted iron outer membrane transporter |
| ? | AP009048 | = 1523065 | 86 (1.130) | coding (1715/2103 nt) | yncD | predicted iron outer membrane transporter | |||||
ATATTACGGGCGATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1522990‑1523049‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCCCG < AP009048/1523065‑1522996 ATATTACGGGCGATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTG > 1:683623/1‑60 CGGGCGATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGC < 1:5934237/71‑1 CGATCCCTGGCATCCGATTACC‑TTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAATGT < 1:2148925/71‑1 GATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCATACATTGATGCGACCTATCGCAGCAATGT < 1:2374050/71‑1 GATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAATGT < 1:1649321/71‑1 GATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAATGT < 1:5211665/71‑1 GATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAATGT < 1:6215447/71‑1 GCATCCGATTACCGTTACAATCCTGTTCATTGCAAACAT > 1:7536608/1‑39 GCATCCGATTACCGTTACAATCCTGTTCATTGCAAACAT > 1:5287981/1‑39 GCATCCGATTACCGTTACAATCCTGTTCATTGCAAACAT > 1:7526267/1‑39 TCCGATTACCGTTACAATCCTGTTCATTGCAAACATT < 1:74978/37‑1 TTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAA > 1:3297416/1‑52 TTACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGCAGCAA > 1:1907307/1‑52 ACCGTTACAATCCTGTTCATTGCAAACATTGATGCGACCTATCGC > 1:418029/1‑45 CAATCCTGTTCATTGCATACATTGATGCGACCTATCGCAGCAATGT < 1:6266949/46‑1 TCCTGTTCATTGCAAACATTGATGCGACCTATCGC > 1:7394407/1‑35 TCCTGTTCATTGCAAACATTGATGCGACCTATCGC > 1:7803498/1‑35 TCCTGTTCATTGCAAACATTGATGCGACCTATCGC > 1:4116196/1‑35 TTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCC > 1:4827075/1‑71 TTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCC > 1:3345911/1‑71 TTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCC > 1:1260297/1‑71 TTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAA < 1:2591856/46‑1 TGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACG > 1:3941640/1‑47 TGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACG > 1:1111418/1‑47 GATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCCCG > 1:6864041/1‑71 GATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGAT > 1:6035542/1‑65 GATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGAT > 1:3999337/1‑65 GATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGA > 1:627505/1‑55 ATATTACGGGCGATCCCTGGCATCCGATTACCGTTACAATCCTGTTCATTGCAAACATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1522990‑1523049‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGGTAATCGGATGCCAGGGATCGCCCG < AP009048/1523065‑1522996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |