New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	1650721 =	62 (0.760)	7 (0.090)	4/92	NT	11.1%	coding (185/219 nt)	ydfC	hypothetical protein
	?	AP009048	1650742 =	54 (0.710)					coding (206/219 nt)	ydfC	hypothetical protein

ACTCCTTAATTACTAACCTTAGCTTTGTTGATTAGCTACTAACGCGGGTATGTAATCATTCTGGCAATGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1650793‑1650721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaCATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTG  >  AP009048/1650742‑1650810                                                                                                                                                ACTCCTTAATTACTAACCTTAGCTTTGTTGATTAGCTACTAACGCGGGTATGTAATCATTCTGGCAATGCT                                                                         <  1:6245589/71‑1     CTTAATTACTAACCTTAGCTTTGTTGATTAGCTACTAACGCGGGTATGTAATCATTCTGGCAATGCTTA                                                                       <  1:4210125/69‑1                                                  ATGTAATCATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTA                                                   <  1:2703323/44‑1                                                  ATGTAATCATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTA                                                   <  1:578834/44‑1                                                    GTAATCATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTAATCAACAA                                           <  1:3498584/50‑1                                                       ATCATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGT                   >  1:2868624/1‑71                                                        TCATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTAATC                                                >  1:3591253/1‑41                                                        TCATTCTGGCAATGCTTACATACCAGCGTTAGTAGCTAATC                                                >  1:4749615/1‑41                                                         CATTCTGGCAATGCTTACATACCCGCGTTAGTAGCTA                                                   <  1:3972134/37‑1                                                                       TTACATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGT   >  1:316450/1‑71                                                                        TACATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTG  >  1:929549/1‑71                                                                         ACATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTG  <  1:6502137/70‑1                                                                                                                                                ACTCCTTAATTACTAACCTTAGCTTTGTTGATTAGCTACTAACGCGGGTATGTAATCATTCTGGCAATGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1650793‑1650721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaCATACCCGCGTTAGTAGCTAATCAACAAAGCTAAGGTTAGTAATTAAGGAGTTCTCCACGGGTGAGGTG  >  AP009048/1650742‑1650810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.