| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1659087 = | 72 (0.880) | 7 (0.090) | 3/92 | NT | 8.5% | coding (85/711 nt) | ynfC | hypothetical protein |
| ? | AP009048 | 1659114 = | 84 (1.100) | coding (58/711 nt) | ynfC | hypothetical protein | |||||
ACTACCATGCTTACTCGCGATATTCCTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1659157‑1659087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCAC > AP009048/1659114‑1659180 ACTACCATGCTTACTCGCGATATTCCTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCT < 1:6329027/70‑1 ATGCTTACTCGCGATATTCCTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCTG < 1:2129196/65‑1 ATGCTTACTCGCGATATTCCTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCTG < 1:5388535/65‑1 ACAGAGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAT < 1:7928192/66‑1 ACAGAGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCAT < 1:2208642/66‑1 AGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGA < 1:7094023/45‑1 AGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGA < 1:2259986/45‑1 AGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGA < 1:6978656/45‑1 AGGTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGA < 1:3776275/45‑1 GTAACACTTTCATTTACCCCTGTGCGGTCACATCCTGTGAGGAAT > 1:2127186/1‑45 CTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCA > 1:3593304/1‑60 CTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCA > 1:218849/1‑60 CTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCA > 1:1259139/1‑60 CTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAA > 1:566269/1‑49 CTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTA < 1:7449466/45‑1 TGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACTGT < 1:5247099/66‑1 TGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTC < 1:4763079/67‑1 TGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTC < 1:7436518/67‑1 GTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCAC > 1:4111502/1‑68 GTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTA > 1:7861189/1‑53 ACTACCATGCTTACTCGCGATATTCCTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1659157‑1659087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCAC > AP009048/1659114‑1659180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |