| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1730724 | 79 (0.970) | 4 (0.060) | 4/80 | NT | 5.0% | intergenic (+16/‑77) | rnt/lhr | ribonuclease T (RNase T)/predicted ATP‑dependent helicase |
| ? | AP009048 | = 1730738 | 87 (1.310) | intergenic (+30/‑63) | rnt/lhr | ribonuclease T (RNase T)/predicted ATP‑dependent helicase | |||||
AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1730648‑1730724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcctgaATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAGA < AP009048/1730738‑1730669 AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGGCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGAT > 1:963767/1‑71AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGAT > 1:1666263/1‑71AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGAT > 1:6395455/1‑71AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGA < 1:3650990/70‑1 TCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGAT < 1:5109156/69‑1 CGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGC > 1:6250909/1‑70 GTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGA > 1:5532252/1‑66 GGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGAATCATTGCATGTCAT < 1:960952/68‑1 GAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGAATCATTGCATGTCATCAGGC < 1:5421479/71‑1 AGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGAATCATTGCATGTCATCAGGCA < 1:122083/71‑1 GGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGAAACATTGCATGTCATCAG > 1:4145004/1‑67 CCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCG < 1:7663954/35‑1 CCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCG < 1:2740896/35‑1 CCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCG < 1:2607225/35‑1 CGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGA > 1:5056553/1‑35 ATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTG < 1:2853318/37‑1 GATGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGC < 1:6553433/71‑1 GATGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGC < 1:995882/71‑1 GATGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGC < 1:1177082/71‑1 GATGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCA > 1:2210982/1‑58 ATGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGG > 1:5897175/1‑65 ATGCCTGAATCATTGCATGTCATCAGGCATCGACTC < 1:795419/36‑1 ATGCCTGAATCATTGCATGTCATCAGGCATCGACTC < 1:7552347/36‑1 TGCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCT < 1:694661/71‑1 GCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTC > 1:4952001/1‑71 GCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTC > 1:1759657/1‑71 GCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTC > 1:7418249/1‑71 GCCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCT > 1:3321773/1‑70 CCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTC < 1:3201603/70‑1 CCTGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTC < 1:4902522/70‑1 TGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCC > 1:7742960/1‑70 TGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCC > 1:2098611/1‑69 TGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCG > 1:354593/1‑59 TGAATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCG > 1:4545462/1‑59 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAGA > 1:322778/1‑71 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAG < 1:3238380/70‑1 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAG < 1:6752551/70‑1 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAG < 1:6838616/70‑1 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAG < 1:4330143/70‑1 AATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCT > 1:3361228/1‑65 AATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1730648‑1730724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcctgaATCATTGCATGTCATCAGGCATCGACTCGATTACACCTCTTCGGCGGCAGATAGCGGCCAGCCTCCCAGA < AP009048/1730738‑1730669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |