| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1961939 | 87 (1.070) | 8 (0.110) | 3/88 | NT | 9.4% | coding (164/1734 nt) | argS | arginyl‑tRNA synthetase |
| ? | AP009048 | = 1961957 | 76 (1.040) | coding (182/1734 nt) | argS | arginyl‑tRNA synthetase | |||||
CAGCAAAAGTTCAGTTCGGCGACTATCAGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1961867‑1961939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGATAG < AP009048/1961957‑1961889 CAGCAAAAGTTCAGTTCGGCGACTATCAGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCA > 1:6720877/1‑71 AGCAAAAGTTCAGTTCGGCGACTATCAGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCA < 1:6866842/70‑1 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:7244305/1‑69 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:7136666/1‑69 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:4633280/1‑69 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:6819094/1‑69 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:3795713/1‑69 AGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGC > 1:6828312/1‑69 GGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCGCGGTGCCAT < 1:1812496/71‑1 GGCAGTTGCTAAAAAACTGGGTATGGCACCTGCTCTGCTAATTGTCG < 1:2985800/47‑1 GCACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCT < 1:318479/69‑1 GCACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCA < 1:1918241/47‑1 GCACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGC < 1:636122/46‑1 GCACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGC < 1:5412140/46‑1 GCACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGGTTT < 1:6730131/41‑1 CACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGA > 1:1934562/1‑70 CACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGA > 1:1503611/1‑70 CACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGC > 1:113289/1‑45 ACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGATA < 1:4285021/71‑1 ACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGATA < 1:4214151/71‑1 ACCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAA > 1:5344903/1‑46 CCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCC > 1:4358449/1‑65 CCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTT > 1:3391320/1‑40 CCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTT > 1:2597653/1‑40 CCTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTT > 1:1190091/1‑40 CTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGATAG < 1:4409966/70‑1 CTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCC > 1:1011074/1‑64 CAGCAAAAGTTCAGTTCGGCGACTATCAGGCTAACGGCATGATGGCAGTTGCTAAAAAACTGGGTATGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1961867‑1961939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccTGCTCTGCTAATTGTCGCGGTGCCATACCCAGTTTTTTAGCAACTGCCATCATGCCGTTAGCCTGATAG < AP009048/1961957‑1961889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |