| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2010293 | 51 (0.630) | 3 (0.040) | 3/90 | NT | 6.5% | intergenic (‑66/‑121) | yedD/yedE | hypothetical protein/predicted inner membrane protein |
| ? | AP009048 | = 2010308 | 39 (0.520) | intergenic (‑81/‑106) | yedD/yedE | hypothetical protein/predicted inner membrane protein | |||||
TTTTTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2010220‑2010293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCCTCTTTTCTTCTCAT < AP009048/2010308‑2010240 TTTTTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTT > 1:5099341/1‑71 TTTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTC < 1:2479480/70‑1 TTTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTC < 1:2905182/70‑1 TTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTC > 1:6751352/1‑69 TTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTC > 1:3090049/1‑69 TTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTT > 1:5004623/1‑68 GAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTCAAATTTCTCTCTGAACCTTGA < 1:3736965/69‑1 AAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTCAAATTTCTCTCTGAACCTTGAAAG > 1:4131119/1‑66 AAGCCCTGATGTCGCCAGCCTTTCAAATTTCTCTCTGAA < 1:565078/39‑1 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCCTCTTTTCTTCTCA > 1:2255644/1‑71 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTA > 1:1753250/1‑46 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTA > 1:7251402/1‑46 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:1948244/1‑38 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:6210745/1‑38 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:4231916/1‑38 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:2082063/1‑38 CAAATTTCTCTCTGAACCTTGAAAGGCTGGCGACAT > 1:6995975/1‑36 AAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCCTCTTTTCTTCTCAT > 1:6186862/1‑71 AAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCCTCTTTTCTTCTCAT < 1:2253818/71‑1 AAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCC < 1:7080781/57‑1 AAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:6282241/1‑37 AAATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCA > 1:6506/1‑37 AATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAAT < 1:7746455/46‑1 TTTTTCATCATTCGTCCTGCATGAGAAGAAAAGAGGATTGTGGCATTAAAGCCCTGATGTCGCCAGCCTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2010220‑2010293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaATTTCTCTCTGAACCTTGAAAGGCTGGCGACATCAGGGCTTTAATGCCACAATCCTCTTTTCTTCTCAT < AP009048/2010308‑2010240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |