| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2116525 = | 73 (0.900) | 7 (0.100) | 4/84 | NT | 9.3% | intergenic (‑61/+114) | galF/wcaM | predicted subunit with GalU/predicted colanic acid biosynthesis protein |
| ? | AP009048 | 2116545 = | 74 (1.060) | intergenic (‑81/+94) | galF/wcaM | predicted subunit with GalU/predicted colanic acid biosynthesis protein | |||||
GGAACAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2116601‑2116525‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgatTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACT > AP009048/2116545‑2116612 GGAACAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTA < 1:963884/71‑1 CAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTG < 1:6898929/71‑1 CAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATT > 1:6125292/1‑70 CAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATT > 1:3713156/1‑70 AATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTGA > 1:1713662/1‑71 GCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTGA < 1:3430090/68‑1 GCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAAT < 1:6826001/65‑1 GCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAAT < 1:7647168/65‑1 TACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTG > 1:769980/1‑65 TACTGCAATCCACAACGAAGCGGAGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTG > 1:7694734/1‑65 GCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTGA < 1:3995568/62‑1 CGAAGCTGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA > 1:1012253/1‑47 CGAAGCGGCGTAACGTCACAAGTAATTCAGTAATCAATTCAGGGTAA > 1:5275943/1‑47 CGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA > 1:5381170/1‑47 CGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA > 1:3502689/1‑47 CGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA > 1:5858032/1‑47 GAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCCGGGTAA < 1:16223/46‑1 GAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA < 1:643122/46‑1 GAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAA < 1:5500069/46‑1 AATCAATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTT < 1:1950158/55‑1 ATCAATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCA < 1:5788262/64‑1 ATCAATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCA < 1:1917109/64‑1 ATCAATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTT < 1:497131/54‑1 TCAATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGT > 1:4954337/1‑55 ATTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGT > 1:7652121/1‑62 TTCAGGGTAATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTT < 1:2596010/49‑1 AATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTAT < 1:1106463/71‑1 AATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTAT < 1:5123336/71‑1 AATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTAT < 1:1939063/71‑1 AATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGT < 1:6140936/69‑1 AATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCT < 1:1672024/65‑1 ATTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTAT > 1:4540513/1‑70 TTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTG < 1:4501291/47‑1 TTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTG < 1:7173725/47‑1 TTGATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTG < 1:1453873/47‑1 GATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACT > 1:5262692/1‑71 GATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTG < 1:3988261/45‑1 GATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTG < 1:1141341/45‑1 ATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAG < 1:4473907/47‑1 ATTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAG < 1:5361571/47‑1 GGAACAATGCTACTGCAATCCACAACGAAGCGGCGTAACATCACAAGTAATTCAGTAATCAATTCAGGGTAATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2116601‑2116525‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgatTACTGAATTACTTGTGATGTTACGCCGCTTCGTTGTGGATTGCAGTAGCATTGTTCCTAAGTATGACT > AP009048/2116545‑2116612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |