| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2469854 = | 75 (0.920) | 9 (0.120) | 4/90 | NT | 13.9% | coding (600/756 nt) | vacJ | predicted lipoprotein |
| ? | AP009048 | 2469887 = | 43 (0.580) | coding (567/756 nt) | vacJ | predicted lipoprotein | |||||
GACCTGGCCGATGTCTGTGGGTAAATGGACGCTTGAAGGGATCGAAACCCGCGCTCAGCTGCTGGATTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2469926‑2469854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAAAACCATC > AP009048/2469887‑2469955 GACCTGGCCGATGTCTGTGGGTAAATGGACGCTTGAAGGGATCGAAACCCGCGCTCAGCTGCTGGATTCC > 1:3723992/1‑70 AAACCCGCGCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCATTTACCCACAG < 1:7510364/55‑1 AAACCCGCGCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCATTTACCCACAG < 1:3726716/55‑1 AAACCCGCGCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCATTTACCCACAG < 1:2248110/55‑1 AACCCGCGCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCA < 1:4512025/69‑1 GCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCAT > 1:4431540/1‑37 GCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCAT > 1:5833631/1‑37 GCTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCAT > 1:1263897/1‑37 GCTCAGATGCTGGATTCCGATCCCTTCAAGCGTCCAT > 1:1014045/1‑37 CTCAGCTGCTGGATTCCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAG > 1:457947/1‑57 CGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAG > 1:410527/1‑55 CGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAG > 1:4995091/1‑55 CGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAG > 1:5588681/1‑55 GATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAAAACCA < 1:1400374/70‑1 GATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAAAACCA < 1:5044432/70‑1 GATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGA < 1:2915507/51‑1 GATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGA < 1:5806635/51‑1 ATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAAAACCATC < 1:1452560/71‑1 ATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAA < 1:4627286/64‑1 ATCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGG > 1:4536503/1‑40 TCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAG > 1:1704533/1‑47 TCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAG > 1:5742521/1‑47 TCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAG > 1:1121416/1‑47 GACCTGGCCGATGTCTGTGGGTAAATGGACGCTTGAAGGGATCGAAACCCGCGCTCAGCTGCTGGATTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2469926‑2469854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatCCCTTCAAGCGTCCATTTACCCACAGACATCGGCCAGGTCAGCCAGGAAAGAACCGGGTAAAAACCATC > AP009048/2469887‑2469955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |